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NC_023741.1__YP_009018481.1__STINGER_66__00066

Bact-Vir

NC_023741.1__YP_009018481.1__STINGER_66__00066

Identity

Accession:
NC_023741 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Coopervirus› Mycobacterium_phage_Stinger

TaxID: 1089137

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-63
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 53.0 3.23e-01 80.8% 22.5%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.70 59.0 4.35e-01 100.0% 35.8%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.70 49.0 4.87e-01 75.0% 85.2%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 52.0 3.20e-01 88.5% 98.1%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.64 52.0 4.11e-01 94.2% 72.3%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 54.0 3.82e-01 100.0% 65.2%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 53.0 3.60e-01 100.0% 48.0%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.63 53.0 4.34e-01 98.1% 84.2%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 44.0 3.36e-01 75.0% 70.5%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 3.67e-01 82.7% 58.6%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.61 44.0 3.91e-01 80.8% 91.5%
2r16A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.61e-01 100.0% 62.9%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.56e-01 100.0% 61.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.80e-01 94.2% 71.8%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 50.0 2.99e-01 92.3% 40.8%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.54e-01 100.0% 64.2%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.67e-01 86.5% 78.7%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 49.0 3.16e-01 98.1% 68.8%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 48.0 3.50e-01 100.0% 65.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.57 46.0 4.13e-01 94.2% 87.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.05e-01 86.5% 98.5%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 3.29e-01 98.1% 58.5%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 47.0 3.72e-01 96.2% 98.2%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 38.0 2.65e-01 76.9% 97.0%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 42.0 2.69e-01 90.4% 52.6%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 37.0 3.71e-01 76.9% 69.1%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 37.0 2.98e-01 76.9% 75.6%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 35.0 3.42e-01 73.1% 61.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3323191 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.78 53.0 4.70e-01 71.2% 52.0%
4527067 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.73 63.0 4.05e-01 100.0% 28.2%
3934156 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 58.0 4.49e-01 88.5% 80.9%
426018 5.1.4.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 53.0 3.22e-01 80.8% 22.0%
3584551 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.70 57.0 3.78e-01 92.3% 72.1%
185632 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.68 51.0 3.16e-01 82.7% 17.5%
5029671 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.67 56.0 3.94e-01 92.3% 33.1%
4030664 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.67 55.0 3.92e-01 98.1% 94.9%
3839291 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.65 48.0 3.13e-01 80.8% 47.2%
3595178 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 47.0 2.67e-01 80.8% 12.6%
3588455 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 46.0 4.20e-01 76.9% 58.6%
5062742 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 46.0 3.86e-01 90.4% 44.4%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 50.0 3.15e-01 92.3% 20.7%
4259070 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.62 43.0 4.44e-01 75.0% 86.0%
3938315 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.61 52.0 3.60e-01 100.0% 47.8%
3251374 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.61 51.0 3.43e-01 100.0% 47.1%
3230771 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.61 50.0 4.24e-01 94.2% 70.0%
3949260 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.60 41.0 3.26e-01 71.2% 95.5%
139153 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.60 50.0 2.98e-01 92.3% 40.7%
3901670 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.60 49.0 3.22e-01 92.3% 64.0%
3785319 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.58 45.0 4.03e-01 94.2% 97.6%
3706087 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.75e-01 100.0% 98.3%
3214084 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 47.0 3.44e-01 100.0% 60.0%
1391369 10.1.1.42 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH101_N 0.57 46.0 3.27e-01 98.1% 56.6%
3406773 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.56 43.0 3.94e-01 84.6% 94.3%
1921564 101.1.2.237 ↗ alpha arrays › HTH › HTH › winged helix domain › ThcOx 0.55 39.0 3.15e-01 78.8% 82.6%
4127691 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.55 39.0 3.07e-01 76.9% 71.3%
4988587 102.1.2.18 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › OGG_N 0.54 42.0 2.73e-01 88.5% 40.6%
3386607 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.53 37.0 2.96e-01 75.0% 72.2%
4989110 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.52 42.0 3.71e-01 92.3% 95.0%
3232262 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 42.0 3.44e-01 98.1% 69.1%
3716034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.57e-01 92.3% 82.1%
3967702 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.50 36.0 2.90e-01 82.7% 68.8%