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NC_024121.1__YP_009030189.1__FF83_gp273__00142

Bact-Vir

NC_024121.1__YP_009030189.1__FF83_gp273__00142

Identity

Accession:
NC_024121 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muldoonvirus› Serratia_phage_PS2

TaxID: 1481112

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.70 51.0 4.73e-01 92.9% 60.7%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 50.0 4.06e-01 74.3% 61.1%
2vqgA00 1.10.10.1280 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Alpha-helical porin B/porin C 0.68 55.0 5.41e-01 100.0% 82.9%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.68 51.0 5.25e-01 81.4% 97.1%
2efjA01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.67 49.0 3.97e-01 77.1% 77.6%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.67 49.0 4.04e-01 78.6% 100.0%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.67 42.0 3.57e-01 95.7% 40.7%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.62 52.0 5.09e-01 91.4% 92.0%
4uw9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 53.0 5.07e-01 97.1% 85.5%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.61 52.0 3.99e-01 98.6% 52.3%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 49.0 3.92e-01 100.0% 43.8%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 51.0 4.06e-01 100.0% 46.9%
1e8yA03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.59 37.0 2.73e-01 91.4% 23.7%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 51.0 4.08e-01 97.1% 86.5%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.58 46.0 4.59e-01 98.6% 84.9%
5c9eB01 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 43.0 4.03e-01 88.6% 64.4%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 50.0 4.59e-01 97.1% 74.7%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 47.0 4.51e-01 90.0% 90.0%
3x0uB01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.57 48.0 3.38e-01 97.1% 34.2%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 3.90e-01 95.7% 85.1%
3js6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.97e-01 91.4% 64.7%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 48.0 3.78e-01 97.1% 81.8%
1eg3A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 45.0 4.21e-01 91.4% 84.6%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.56 41.0 4.06e-01 94.3% 74.0%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.55 48.0 4.17e-01 100.0% 62.4%
2aj4B03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 48.0 3.70e-01 98.6% 72.2%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 48.0 4.34e-01 95.7% 91.7%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.55 35.0 2.95e-01 92.9% 34.3%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.55 49.0 4.19e-01 97.1% 83.6%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.54 44.0 3.98e-01 100.0% 63.3%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 46.0 3.84e-01 94.3% 76.2%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 41.0 4.11e-01 85.7% 84.5%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 4.08e-01 97.1% 77.8%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 4.05e-01 98.6% 79.6%
5fgzA02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.53 43.0 3.32e-01 91.4% 76.1%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.80e-01 94.3% 77.3%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.51 44.0 3.85e-01 100.0% 65.5%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 44.0 4.40e-01 100.0% 93.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3735746 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.74 61.0 3.68e-01 90.0% 14.6%
3832084 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 45.0 4.43e-01 95.7% 60.0%
4946915 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 47.0 4.12e-01 71.4% 47.6%
5039441 633.21.1.47 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › SPW 0.69 48.0 4.09e-01 100.0% 46.4%
4981587 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.68 49.0 3.97e-01 100.0% 40.8%
5048577 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.67 58.0 5.56e-01 97.1% 86.3%
4027476 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.66 57.0 5.43e-01 98.6% 81.2%
4939905 325.1.1.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › Biotin_carb_C 0.66 56.0 5.11e-01 91.4% 75.6%
3624728 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 48.0 4.54e-01 98.6% 64.7%
5079853 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.65 49.0 4.01e-01 100.0% 43.8%
4992431 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.65 49.0 4.00e-01 100.0% 44.8%
3257460 7579.1.1.71 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DDHD 0.63 52.0 3.47e-01 88.6% 41.3%
3598778 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.63 52.0 5.24e-01 98.6% 90.0%
5029911 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.63 38.0 4.11e-01 84.3% 72.9%
5004518 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.62 41.0 4.03e-01 94.3% 62.7%
3607719 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.61 54.0 5.11e-01 98.6% 92.9%
3611276 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.61 51.0 4.63e-01 97.1% 90.0%
4975796 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.59 51.0 4.63e-01 97.1% 89.5%
3576591 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 46.0 3.74e-01 85.7% 60.7%
3236920 106.1.1.8 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.58 51.0 4.01e-01 98.6% 81.3%
5074955 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 45.0 4.18e-01 85.7% 74.4%
3367150 3718.1.1.0 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.56 51.0 4.55e-01 98.6% 72.6%
3708255 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 41.0 4.02e-01 94.3% 74.7%
1556812 612.1.1.0 ↗ alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins 0.55 35.0 2.95e-01 92.9% 34.3%
5055834 3009.2.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain 0.55 40.0 3.93e-01 81.4% 71.2%
167231 532.2.1.4 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › MxiC_C 0.55 43.0 3.89e-01 98.6% 61.2%
3877040 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.53 42.0 4.16e-01 95.7% 80.0%
3576223 604.33.1.1 ↗ alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain › RGM_N 0.53 33.0 3.30e-01 94.3% 58.1%
3583440 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.53 46.0 3.85e-01 97.1% 75.0%
3923407 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.52 47.0 4.01e-01 98.6% 78.2%
3988856 4146.1.1.1 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.52 45.0 4.42e-01 98.6% 89.2%
5022286 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.52 46.0 3.75e-01 100.0% 56.3%
4936980 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.52 44.0 3.73e-01 92.9% 64.3%
3946317 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 38.0 3.80e-01 95.7% 82.9%
D2 high residues 79-164
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 41.4 2.30e-10 98.8% 86.7%
PF13455.13 MUG113 39.3 1.10e-09 80.2% 91.8%