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NC_024123.1__YP_009030568.1__FF13_gp36__00036

Bact-Vir

NC_024123.1__YP_009030568.1__FF13_gp36__00036

Identity

Accession:
NC_024123 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kochitakasuvirus› Pseudomonas_phage_KPP25

TaxID: 1462608

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-100
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.82 58.0 5.05e-01 100.0% 52.3%
3ibpA01 1.20.58.850 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 59.0 5.60e-01 96.8% 79.2%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 42.0 4.14e-01 95.2% 60.3%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.65 62.0 5.11e-01 100.0% 64.7%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.63 49.0 3.74e-01 100.0% 36.7%
1r5aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 43.0 3.39e-01 100.0% 33.8%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 43.0 4.28e-01 95.2% 69.7%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.62 57.0 5.05e-01 100.0% 80.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.61 45.0 5.15e-01 82.5% 100.0%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 45.0 3.59e-01 85.7% 73.9%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 47.0 4.22e-01 100.0% 77.8%
4zbwA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 38.0 3.51e-01 71.4% 55.2%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 50.0 4.68e-01 100.0% 89.7%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.55 36.0 3.19e-01 93.7% 45.7%
2h4pA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.55 47.0 3.22e-01 100.0% 82.3%
2qv0A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 46.0 3.68e-01 92.1% 100.0%
1wz9A01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.54 44.0 3.08e-01 92.1% 33.5%
2pgsA02 1.10.3550.10 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like 0.54 45.0 3.74e-01 95.2% 51.3%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 34.0 3.87e-01 88.9% 89.4%
1zbuB01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.52 40.0 3.86e-01 87.3% 77.0%
4gc5A02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.52 38.0 3.51e-01 82.5% 73.3%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 40.0 2.75e-01 82.5% 60.9%
1jrrA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.51 41.0 3.00e-01 100.0% 49.3%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.32e-01 100.0% 64.8%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3496288 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.75 62.0 6.18e-01 98.4% 87.7%
4965010 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.74 58.0 4.13e-01 100.0% 28.2%
3241469 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.73 57.0 6.02e-01 90.5% 98.2%
3253225 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.72 64.0 5.79e-01 98.4% 75.3%
4608719 3541.1.1.2 ↗ beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG29_N 0.69 50.0 4.42e-01 100.0% 53.3%
3676853 109.4.1.1865 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAP 0.68 49.0 2.89e-01 87.3% 9.3%
3965106 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.68 54.0 5.11e-01 100.0% 72.0%
3257421 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 56.0 5.48e-01 98.4% 87.1%
3822008 5069.1.3.93 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Prolamin_like 0.66 43.0 3.85e-01 96.8% 47.8%
4937093 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 48.0 3.94e-01 100.0% 41.7%
4932863 101.1.2.947 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27234 0.65 48.0 4.43e-01 98.4% 61.3%
3273602 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.65 48.0 5.05e-01 84.1% 92.7%
4362811 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 42.0 4.47e-01 88.9% 76.4%
4934293 4993.1.1.0 ↗ extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.65 48.0 4.46e-01 100.0% 62.5%
4028828 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.64 52.0 5.15e-01 88.9% 90.8%
4567796 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.64 37.0 3.50e-01 82.5% 48.0%
3953227 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.64 52.0 4.47e-01 100.0% 56.0%
3583564 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.63 48.0 4.70e-01 100.0% 75.7%
223985 3600.1.1.1 ↗ alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD 0.63 60.0 4.38e-01 100.0% 45.9%
3698371 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.63 40.0 4.31e-01 79.4% 80.0%
3191289 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.63 46.0 4.94e-01 81.0% 100.0%
3672635 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.62 44.0 4.18e-01 98.4% 62.7%
3969984 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.82e-01 88.9% 83.1%
1066185 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.62 44.0 4.64e-01 79.4% 88.9%
3579277 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.61 41.0 4.32e-01 84.1% 78.2%
3724928 192.8.1.35 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 0.61 57.0 4.67e-01 100.0% 60.0%
4423693 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.60 36.0 3.88e-01 88.9% 69.1%
3204035 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.60 55.0 3.39e-01 100.0% 18.5%
3202292 101.38.1.3 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891 0.58 45.0 4.39e-01 100.0% 75.7%
3668249 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.58 36.0 3.94e-01 76.2% 86.7%
3198319 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 52.0 3.22e-01 100.0% 18.8%
3257744 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 43.0 3.01e-01 81.0% 57.1%
5048929 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.57 44.0 4.27e-01 100.0% 75.7%
3249906 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.53 46.0 4.25e-01 100.0% 92.9%
3255248 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.53 34.0 3.31e-01 98.4% 57.1%
4305205 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.52 41.0 2.77e-01 93.7% 70.0%
3810597 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.50 37.0 2.68e-01 79.4% 53.7%