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NC_024137.1__YP_009031495.1__Bcp1_212__00214
Bact-VirNC_024137.1__YP_009031495.1__Bcp1_212__00214
Identity
- Accession:
- NC_024137 ↗
- Kingdom:
- phage
Quality
72.5
mean pLDDT
Taxonomy
TaxID: 584892
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 30-94
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.63 | 51.0 | 3.92e-01 | 89.2% | 66.4% |
| 2f2gA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.61 | 47.0 | 3.31e-01 | 84.6% | 97.2% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.60 | 48.0 | 3.75e-01 | 92.3% | 57.6% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 46.0 | 3.70e-01 | 84.6% | 69.5% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 40.0 | 3.61e-01 | 70.8% | 74.7% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.59 | 40.0 | 3.32e-01 | 70.8% | 54.5% |
| 1af7A01 | 1.10.155.10 | Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.58 | 47.0 | 4.42e-01 | 93.8% | 72.5% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 44.0 | 3.20e-01 | 92.3% | 29.5% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.57 | 37.0 | 3.48e-01 | 90.8% | 54.4% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 42.0 | 3.34e-01 | 81.5% | 57.2% |
| 8b0qA01 | 3.30.420.340 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain | 0.56 | 40.0 | 2.96e-01 | 76.9% | 88.6% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 35.0 | 3.56e-01 | 80.0% | 63.6% |
| 1t11A02 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.53 | 47.0 | 3.52e-01 | 100.0% | 80.1% |
| 1x9fC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 42.0 | 3.25e-01 | 95.4% | 37.6% |
| 2zooA02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 36.0 | 2.99e-01 | 70.8% | 87.7% |
| 2wh5A00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.53 | 46.0 | 4.19e-01 | 100.0% | 100.0% |
| 6gpxB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 46.0 | 3.11e-01 | 100.0% | 40.7% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 44.0 | 2.96e-01 | 93.8% | 35.5% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 41.0 | 3.27e-01 | 90.8% | 73.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929842 | 386.1.1.65 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1059 | 0.76 | 41.0 | 4.74e-01 | 70.8% | 75.6% |
| 3738672 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 36.0 | 3.19e-01 | 90.8% | 37.8% |
| 3741412 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.66 | 52.0 | 3.94e-01 | 86.2% | 96.1% |
| 3179043 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.65 | 42.0 | 3.58e-01 | 73.8% | 41.0% |
| 3402666 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.65 | 47.0 | 4.08e-01 | 75.4% | 73.7% |
| 2577269 | 7103.1.1.1 ↗ | alpha arrays › MJ1004, C-terminal domain › MJ1004, C-terminal domain › MJ1004, C-terminal domain › PF31224 | 0.65 | 54.0 | 4.87e-01 | 90.8% | 78.2% |
| 4044470 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.64 | 43.0 | 3.74e-01 | 78.5% | 45.0% |
| 4989839 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.63 | 53.0 | 4.41e-01 | 95.4% | 90.0% |
| 4971630 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.62 | 50.0 | 4.02e-01 | 90.8% | 84.4% |
| 4322551 | 604.23.1.0 ↗ | alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain | 0.62 | 43.0 | 4.62e-01 | 72.3% | 89.1% |
| 5023822 | 7103.1.1.1 ↗ | alpha arrays › MJ1004, C-terminal domain › MJ1004, C-terminal domain › MJ1004, C-terminal domain › PF31224 | 0.61 | 52.0 | 4.66e-01 | 93.8% | 74.4% |
| 4945339 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 48.0 | 3.56e-01 | 86.2% | 47.6% |
| 3702849 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 48.0 | 4.15e-01 | 87.7% | 70.5% |
| 4110341 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 48.0 | 3.61e-01 | 92.3% | 44.4% |
| 3631076 | 604.3.1.31 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › 2TM_P5A-ATPase | 0.60 | 41.0 | 4.03e-01 | 73.8% | 65.7% |
| 4926960 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.59 | 44.0 | 3.63e-01 | 95.4% | 41.5% |
| 3343887 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.58 | 48.0 | 3.33e-01 | 92.3% | 30.4% |
| 5074233 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.57 | 47.0 | 3.69e-01 | 98.5% | 58.1% |
| 5057279 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.56 | 45.0 | 3.20e-01 | 90.8% | 32.1% |
| 3788953 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.54 | 47.0 | 4.30e-01 | 100.0% | 90.0% |
| 4258325 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.30e-01 | 98.5% | 46.4% |
| 1820990 | 101.1.1.94 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Reb1_MybAD | 0.53 | 35.0 | 3.31e-01 | 100.0% | 57.1% |
| 5059074 | 5076.2.1.18 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF6159 | 0.52 | 43.0 | 3.06e-01 | 95.4% | 73.6% |
| 3700467 | 101.1.2.97 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA_C | 0.51 | 35.0 | 3.33e-01 | 73.8% | 58.3% |
| 3923659 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.51 | 41.0 | 3.53e-01 | 86.2% | 57.9% |