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NC_024138.1__YP_009031536.1__FH33_gp026__00026

Bact-Vir

NC_024138.1__YP_009031536.1__FH33_gp026__00026

Identity

Accession:
NC_024138 ↗
Kingdom:
phage

Quality

68.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Marvinvirus› Mycobacterium_phage_MosMoris

TaxID: 1471542

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-106
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.79 55.0 6.03e-01 75.4% 87.7%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 60.0 5.82e-01 89.9% 74.4%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.76 55.0 5.02e-01 79.7% 58.4%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.73 53.0 5.27e-01 79.7% 74.3%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 60.0 4.20e-01 92.8% 60.2%
7lv8A01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.70 53.0 4.99e-01 81.2% 66.7%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.70 47.0 4.81e-01 71.0% 82.4%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 58.0 5.13e-01 100.0% 68.0%
3q9vA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 38.0 3.37e-01 75.4% 40.8%
2ksfA00 1.20.120.620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Backbone structure of the membrane domain of e. Coli histidine kinase receptor kdpd, 0.63 46.0 3.96e-01 76.8% 89.7%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 43.0 4.02e-01 73.9% 57.5%
2auaA02 1.10.3800.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylation fold › ADP-ribosylation domain 0.58 46.0 4.15e-01 88.4% 63.7%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 48.0 3.32e-01 100.0% 29.3%
3hn2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 36.0 3.03e-01 71.0% 38.3%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 41.0 4.07e-01 82.6% 89.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064040 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 73.0 5.07e-01 100.0% 34.6%
5047150 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 71.0 4.96e-01 100.0% 35.0%
5081618 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.76 70.0 5.73e-01 100.0% 59.2%
4988114 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.76 59.0 4.06e-01 85.5% 25.5%
5081366 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.75 65.0 4.86e-01 100.0% 39.4%
3784652 168.1.1.1 ↗ alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.75 51.0 3.75e-01 72.5% 28.0%
4988487 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.73 56.0 5.41e-01 85.5% 73.4%
3670774 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.72 52.0 4.23e-01 75.4% 50.4%
5014330 148.1.3.402 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook 0.71 65.0 5.50e-01 100.0% 62.7%
3809086 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.70 48.0 4.51e-01 71.0% 58.8%
5023516 3922.1.1.269 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook 0.70 63.0 4.35e-01 100.0% 29.8%
3213193 148.1.1.15 ↗ alpha arrays › Histone-like › Histone-related › Histone › CENP-X 0.69 53.0 5.14e-01 81.2% 74.7%
3738109 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.69 54.0 4.82e-01 84.1% 92.6%
4932707 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 66.0 5.20e-01 100.0% 96.0%
3200876 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.66 48.0 4.38e-01 76.8% 91.1%
4059608 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.65 53.0 3.60e-01 94.2% 23.9%
4118017 4336.2.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.55 41.0 3.71e-01 81.2% 59.0%
5043950 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 37.0 3.56e-01 72.5% 85.0%