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NC_024138.1__YP_009031538.1__FH33_gp028__00028

Bact-Vir

NC_024138.1__YP_009031538.1__FH33_gp028__00028

Identity

Accession:
NC_024138 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Marvinvirus› Mycobacterium_phage_MosMoris

TaxID: 1471542

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-95
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.68 45.0 3.92e-01 83.9% 46.9%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.60 52.0 4.01e-01 100.0% 75.4%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.59 40.0 3.48e-01 71.4% 76.8%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.12e-01 100.0% 25.8%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.55 39.0 2.80e-01 75.0% 66.1%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 43.0 3.67e-01 87.5% 57.0%
3n4dA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.54 40.0 3.03e-01 80.4% 54.2%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.54 38.0 3.50e-01 75.0% 83.8%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 40.0 3.37e-01 82.1% 99.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.19e-01 78.6% 56.0%
4le5B03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.52 38.0 3.04e-01 83.9% 60.7%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.48e-01 91.1% 58.0%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 41.0 3.21e-01 89.3% 55.1%
7d27A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 39.0 2.60e-01 98.2% 20.0%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 39.0 3.24e-01 85.7% 46.1%
4qtcA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 43.0 2.99e-01 94.6% 88.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3922598 4120.1.1.43 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TSTD2_N 0.68 49.0 4.68e-01 76.8% 87.7%
3523516 5063.1.1.11 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › TSTD2_N 0.65 49.0 4.59e-01 82.1% 87.1%
3974439 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.60 48.0 2.69e-01 91.1% 7.8%
1170594 885.1.1.1 ↗ a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.59 40.0 3.48e-01 71.4% 76.8%
3752690 386.1.1.66 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.59 41.0 4.19e-01 73.2% 94.4%
3938287 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.55e-01 83.9% 85.5%
3308843 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.55 44.0 3.09e-01 91.1% 43.0%
4105313 3541.1.1.1 ↗ beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 0.55 43.0 3.25e-01 85.7% 93.3%
3607308 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.54 45.0 2.71e-01 100.0% 32.0%
3739111 2007.2.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.54 46.0 3.28e-01 96.4% 73.9%
4174140 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.53 41.0 3.60e-01 82.1% 60.0%
4449615 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.52 42.0 3.64e-01 91.1% 76.7%
3476478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.73e-01 96.4% 81.1%
3267531 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.52 45.0 3.60e-01 98.2% 77.3%
3610569 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.51 39.0 2.34e-01 83.9% 33.6%
3289942 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.66e-01 89.3% 94.1%
4932061 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.51 30.0 3.29e-01 78.6% 71.1%
3303541 331.18.1.6 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › AAA_assoc 0.51 40.0 3.22e-01 85.7% 76.4%