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NC_024138.1__YP_009031559.1__FH33_gp049__00049

Bact-Vir

NC_024138.1__YP_009031559.1__FH33_gp049__00049

Identity

Accession:
NC_024138 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Marvinvirus› Mycobacterium_phage_MosMoris

TaxID: 1471542

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 128-187
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xnzA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 42.0 3.38e-01 95.0% 39.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4872043 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.60 32.0 2.41e-01 70.0% 20.0%
3281749 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.57 48.0 3.96e-01 96.7% 80.0%
3711208 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.56 41.0 2.92e-01 78.3% 47.6%
4890926 3187.1.1.20 ↗ alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › AAA_9 0.54 33.0 2.73e-01 90.0% 30.3%
3894424 109.4.1.1158 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO11 0.53 44.0 2.59e-01 100.0% 17.9%
3395104 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.51 32.0 2.57e-01 88.3% 27.1%
3858120 109.4.1.1465 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IPO11 0.50 42.0 2.33e-01 100.0% 11.4%
D2 medium residues 188-244
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 54.0 3.86e-01 96.5% 26.4%
6todA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.77 53.0 3.27e-01 89.5% 13.8%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 56.0 4.04e-01 87.7% 72.8%
1tvzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.70 44.0 3.26e-01 77.2% 25.2%
4n4nB00 3.90.640.100 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.70 42.0 4.31e-01 70.2% 62.5%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.69 50.0 3.95e-01 84.2% 38.9%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.66 52.0 3.34e-01 89.5% 17.1%
1jmuB01 3.90.1370.10 Alpha Beta › Alpha-Beta Complex › Protein mu-1, chain B, domain 1 › Protein mu-1, chain B, domain 1 0.64 49.0 3.79e-01 82.5% 75.0%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 53.0 3.93e-01 100.0% 68.4%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 41.0 3.03e-01 84.2% 77.8%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 36.0 2.77e-01 75.4% 28.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4953135 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.83 55.0 3.92e-01 96.5% 26.9%
3503653 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.78 63.0 3.86e-01 87.7% 52.8%
3170708 632.1.1.6 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Pho88 0.70 62.0 4.53e-01 96.5% 37.9%
5036589 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 52.0 3.93e-01 93.0% 35.6%
3515407 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 55.0 3.87e-01 91.2% 31.0%
3691694 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 57.0 4.43e-01 98.2% 45.6%
3519635 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 51.0 4.12e-01 87.7% 67.3%
3489283 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 53.0 3.99e-01 91.2% 40.0%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 54.0 4.12e-01 96.5% 47.4%
4945806 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 51.0 3.99e-01 89.5% 71.7%
3599724 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.62 51.0 3.79e-01 91.2% 59.3%
4942428 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 53.0 3.97e-01 100.0% 68.1%
3973397 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.58 44.0 3.37e-01 86.0% 32.7%
4939253 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.58 44.0 3.50e-01 84.2% 47.5%
3306759 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.53 36.0 2.38e-01 70.2% 46.7%