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NC_024142.2__YP_009113213.1__EpBp4_0025__00024

Bact-Vir

NC_024142.2__YP_009113213.1__EpBp4_0025__00024

Identity

Accession:
NC_024142 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Escherichia_phage_Bp4

TaxID: 1458848

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 208-334
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.63 31.0 2.47e-01 95.3% 24.0%
2d42A01 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.63 55.0 4.84e-01 94.5% 79.9%
1uyjA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.63 55.0 4.80e-01 95.3% 68.6%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 33.0 3.19e-01 96.9% 46.0%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.62 49.0 3.11e-01 96.1% 16.9%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.61 33.0 2.79e-01 96.1% 32.4%
5jmfA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 29.0 2.30e-01 96.9% 20.7%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.58 38.0 3.04e-01 92.1% 32.9%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 33.0 3.29e-01 100.0% 54.3%
3v89A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.57 41.0 2.71e-01 94.5% 15.9%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.54 36.0 3.33e-01 93.7% 52.5%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 35.0 3.34e-01 99.2% 55.4%
3dwoX00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.53 44.0 3.06e-01 96.1% 25.7%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 38.0 2.78e-01 96.1% 26.6%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.53 39.0 2.71e-01 94.5% 23.2%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 36.0 2.72e-01 93.7% 28.8%
3cslA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 47.0 3.01e-01 98.4% 21.3%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 35.0 2.62e-01 94.5% 25.0%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 39.0 2.77e-01 92.9% 25.1%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 27.0 2.47e-01 94.5% 34.1%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 35.0 2.59e-01 92.9% 25.2%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 32.0 2.88e-01 100.0% 45.9%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 32.0 2.47e-01 93.7% 26.3%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 38.0 2.69e-01 92.9% 23.8%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 39.0 3.29e-01 98.4% 49.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4214719 825.1.1.2 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.66 59.0 5.40e-01 96.1% 79.4%
4662377 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.62 40.0 3.04e-01 95.3% 27.5%
None — 0.62 46.0 3.74e-01 94.5% 40.8%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.62 39.0 3.48e-01 100.0% 45.1%
3933957 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.61 36.0 3.37e-01 100.0% 46.9%
3787225 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.60 38.0 3.23e-01 100.0% 41.0%
3388698 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.59 49.0 4.54e-01 90.6% 80.0%
4664957 5084.5.2.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like 0.58 40.0 2.80e-01 100.0% 23.1%
3977398 5084.1.1.16 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom 0.56 37.0 3.41e-01 92.1% 51.9%
3351533 5084.5.1.23 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD 0.56 30.0 2.28e-01 99.2% 20.3%
147643 522.1.1.1 ↗ a+b two layers › Bacteriochlorophyll A protein › Bacteriochlorophyll A protein › Bacteriochlorophyll A protein › BChl_A 0.56 30.0 2.16e-01 94.5% 17.7%
3966027 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.55 46.0 3.17e-01 94.5% 25.7%
4856841 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.53 37.0 2.71e-01 92.9% 26.3%
2321077 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.53 36.0 2.69e-01 93.7% 27.0%
3980621 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.53 32.0 2.73e-01 92.9% 35.3%
4301927 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.53 43.0 3.58e-01 88.2% 93.0%
1298172 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.53 28.0 2.54e-01 96.9% 35.1%
4009827 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.53 36.0 2.55e-01 92.1% 22.2%
1883909 5084.5.3.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.52 45.0 2.87e-01 94.5% 19.5%
1717339 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.52 46.0 2.98e-01 99.2% 20.9%
3965241 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.52 41.0 3.09e-01 95.3% 34.2%
3971028 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.51 45.0 3.01e-01 96.1% 32.9%
1558583 5084.5.4.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › CymA 0.51 36.0 2.76e-01 95.3% 28.9%
4377115 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.51 37.0 2.21e-01 94.5% 8.9%
4670128 5087.3.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.51 36.0 2.95e-01 98.4% 39.5%
3839919 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.50 41.0 3.42e-01 87.4% 95.0%
D2 medium residues 10-68
PDB
D3 medium residues 92-183_336-357
PDB
Domain cluster: rep: NC_048639.1__YP_009830589.1__HWA94_gp18__00018__D93-191