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NC_024142.2__YP_009113216.1__EpBp4_0029__00028
Bact-VirNC_024142.2__YP_009113216.1__EpBp4_0029__00028
Identity
- Accession:
- NC_024142 ↗
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Taxonomy
TaxID: 1458848
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-72
Domain cluster:
rep: IMGVR_UViG_3300002219_000139-3300002219-SCADCLC_1004105930__D4-77
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p16A02 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.56 | 47.0 | 3.91e-01 | 95.7% | 73.2% |
| 2kdoA02 | 1.10.10.900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › SBDS protein C-terminal domain, subdomain 1 | 0.54 | 43.0 | 4.28e-01 | 97.1% | 83.6% |
| 3cdlB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 41.0 | 3.35e-01 | 82.9% | 97.7% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 39.0 | 3.52e-01 | 78.6% | 74.0% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.53 | 46.0 | 3.08e-01 | 100.0% | 49.8% |
| 2c61A00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 2.78e-01 | 100.0% | 73.5% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.52 | 41.0 | 4.16e-01 | 94.3% | 88.7% |
| 3fayA00 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.51 | 35.0 | 2.28e-01 | 74.3% | 23.0% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.51 | 39.0 | 4.20e-01 | 88.6% | 100.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3638063 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.58 | 45.0 | 3.89e-01 | 84.3% | 62.7% |
| 5073702 | 633.29.1.13 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 › DUF2096_N | 0.57 | 40.0 | 3.60e-01 | 74.3% | 79.0% |
| 3421504 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.54 | 43.0 | 3.25e-01 | 97.1% | 43.3% |
| 4943368 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.53 | 37.0 | 3.28e-01 | 72.9% | 80.0% |
| 4462833 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.52 | 37.0 | 3.32e-01 | 72.9% | 84.0% |
| 3662390 | 632.15.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 | 0.52 | 39.0 | 3.52e-01 | 80.0% | 60.0% |
| 4274558 | 7549.1.1.1 ↗ | a/b three-layered sandwiches › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine_A | 0.52 | 44.0 | 2.94e-01 | 100.0% | 50.0% |
| 3950339 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 41.0 | 3.07e-01 | 90.0% | 69.2% |
| 5025487 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.51 | 33.0 | 2.64e-01 | 82.9% | 31.3% |
| 4944750 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 43.0 | 3.52e-01 | 98.6% | 90.7% |
| 4013465 | 7549.1.1.0 ↗ | a/b three-layered sandwiches › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) | 0.51 | 43.0 | 2.89e-01 | 100.0% | 50.5% |