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NC_024215.1__YP_009036875.1__GJ21_gp50__00050

Bact-Vir

NC_024215.1__YP_009036875.1__GJ21_gp50__00050

Identity

Accession:
NC_024215 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nevevirus› Lactococcus_phage_P078

TaxID: 1476886

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: rep: MK448706.1__QBX15888.1__Javan221_0030__00023__D2-53
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.62 43.0 4.04e-01 100.0% 57.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 49.0 4.86e-01 100.0% 86.7%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 40.0 3.89e-01 100.0% 59.7%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 49.0 4.52e-01 96.6% 81.0%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.56 33.0 2.72e-01 81.0% 28.0%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.55 40.0 3.13e-01 79.3% 53.5%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.60e-01 89.7% 82.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 40.0 3.54e-01 100.0% 51.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 37.0 3.17e-01 100.0% 39.4%
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.55 42.0 3.37e-01 87.9% 63.5%
2j8aA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 46.0 4.13e-01 100.0% 100.0%
1b5fB00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 38.0 3.43e-01 77.6% 72.4%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.54 48.0 4.37e-01 100.0% 85.7%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 43.0 3.82e-01 96.6% 79.8%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 41.0 2.68e-01 87.9% 91.9%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 4.16e-01 100.0% 81.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 46.0 3.36e-01 100.0% 46.7%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 38.0 2.59e-01 79.3% 66.1%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.12e-01 70.7% 88.0%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 40.0 2.67e-01 87.9% 54.3%
4r7zA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.67e-01 93.1% 22.2%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 38.0 2.51e-01 81.0% 43.5%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.58e-01 100.0% 50.4%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.28e-01 100.0% 39.4%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 2.97e-01 79.3% 44.8%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 45.0 3.58e-01 100.0% 92.6%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.51 43.0 4.01e-01 100.0% 85.9%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.38e-01 86.2% 86.0%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 3.66e-01 100.0% 71.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 6.02e-01 100.0% 90.0%
4950876 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.68 47.0 2.96e-01 89.7% 13.5%
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.67 51.0 5.05e-01 100.0% 81.7%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 48.0 4.75e-01 100.0% 80.0%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.98e-01 100.0% 85.1%
3509233 304.120.1.12 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF26955 0.60 54.0 4.88e-01 100.0% 98.8%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.89e-01 100.0% 84.6%
5048876 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.60 41.0 3.99e-01 100.0% 64.6%
3539015 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.59 49.0 3.92e-01 94.8% 53.2%
3875549 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.59 39.0 2.76e-01 96.6% 20.5%
3749060 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.59 49.0 4.47e-01 96.6% 82.5%
4264671 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 44.0 4.05e-01 100.0% 61.3%
3997898 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.58 45.0 3.67e-01 87.9% 85.2%
3495764 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 38.0 2.73e-01 96.6% 21.6%
3932780 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.55 42.0 3.62e-01 86.2% 87.0%
4930183 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 38.0 3.44e-01 72.4% 96.2%
3513328 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 41.0 3.94e-01 91.4% 72.9%
3285086 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.54 40.0 3.73e-01 82.8% 77.3%
3638327 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.53 42.0 2.75e-01 89.7% 84.2%
4943729 101.1.2.878 ↗ alpha arrays › HTH › HTH › winged helix domain › CTP-dep_RFKase 0.53 37.0 3.16e-01 87.9% 45.3%
4963651 101.1.2.926 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7346 0.53 43.0 3.87e-01 93.1% 95.3%
4029551 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.53 46.0 2.82e-01 100.0% 17.5%
3258059 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 42.0 4.03e-01 98.3% 92.0%
1031158 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.52 40.0 2.49e-01 87.9% 37.0%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 42.0 4.23e-01 94.8% 100.0%
3513222 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 40.0 2.46e-01 87.9% 37.0%
5067549 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.57e-01 89.7% 69.2%
3617966 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.46e-01 79.3% 98.6%