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NC_024216.1__YP_009037061.1__FP74_gp201__00158

Bact-Vir

NC_024216.1__YP_009037061.1__FP74_gp201__00158

Identity

Accession:
NC_024216 ↗
Kingdom:
phage

Quality

69.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-63
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.70 53.0 3.94e-01 100.0% 30.7%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 47.0 2.85e-01 98.0% 11.6%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.67 44.0 3.76e-01 94.0% 41.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.27e-01 98.0% 61.1%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 51.0 3.79e-01 96.0% 85.1%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 51.0 3.89e-01 96.0% 65.4%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.62 50.0 3.96e-01 100.0% 42.2%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.26e-01 98.0% 59.5%
3c9fA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 51.0 3.14e-01 98.0% 87.3%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 44.0 4.56e-01 96.0% 90.9%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 44.0 3.50e-01 92.0% 36.3%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 47.0 3.35e-01 100.0% 61.9%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 51.0 3.94e-01 100.0% 69.7%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 44.0 3.40e-01 100.0% 32.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 48.0 3.64e-01 100.0% 63.0%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 46.0 3.02e-01 100.0% 28.6%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 3.55e-01 96.0% 46.4%
4jxuA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.58 44.0 3.41e-01 90.0% 76.0%
5mmjp00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.57 44.0 3.90e-01 100.0% 56.2%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.57 39.0 3.10e-01 70.0% 70.8%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 2.68e-01 98.0% 13.5%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 45.0 2.82e-01 100.0% 27.1%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.56 45.0 3.28e-01 100.0% 32.9%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.26e-01 96.0% 32.6%
6nyoA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 47.0 3.24e-01 96.0% 26.1%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 3.26e-01 100.0% 32.2%
3f6kA02 2.10.70.80 Mainly Beta › Ribbon › Complement Module; domain 1 › Sortilin Vps10-D, 10CC-a domain 0.55 43.0 4.23e-01 90.0% 96.5%
4eiuA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.37e-01 96.0% 54.0%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 45.0 2.84e-01 100.0% 22.1%
3c8iA00 2.40.410.10 Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily 0.55 41.0 3.18e-01 86.0% 89.8%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 41.0 3.26e-01 88.0% 36.4%
6gcdA00 3.30.920.90 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.55 40.0 2.87e-01 88.0% 25.2%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.46e-01 98.0% 44.4%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 46.0 3.63e-01 96.0% 67.6%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 45.0 3.60e-01 94.0% 70.3%
2lruA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 3.64e-01 98.0% 55.1%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.31e-01 100.0% 70.3%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 45.0 3.62e-01 96.0% 73.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.64e-01 98.0% 59.5%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 45.0 3.36e-01 100.0% 38.1%
1gteA04 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.95e-01 90.0% 45.8%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 3.33e-01 100.0% 41.7%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 43.0 3.50e-01 94.0% 73.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.12e-01 100.0% 33.8%
6ea2A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.51 42.0 3.42e-01 92.0% 76.0%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.51 43.0 3.12e-01 100.0% 41.7%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.44e-01 90.0% 98.8%
4qjvA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.51 43.0 3.62e-01 98.0% 74.2%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.50 40.0 3.29e-01 94.0% 49.0%
2ifgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 3.64e-01 100.0% 77.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3659556 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 51.0 5.27e-01 88.0% 95.6%
4025325 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 50.0 4.91e-01 100.0% 76.4%
3599949 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 51.0 4.23e-01 100.0% 46.3%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.64 49.0 3.02e-01 98.0% 13.4%
3827309 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.63 52.0 4.40e-01 100.0% 53.3%
3422338 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 51.0 4.24e-01 100.0% 49.5%
432602 2.1.1.93 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Cdc13_OB4_dimer 0.63 51.0 3.89e-01 96.0% 65.4%
3301984 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 50.0 4.84e-01 88.0% 83.6%
1346676 3347.1.1.1 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.62 50.0 3.96e-01 100.0% 42.2%
4452431 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.61 53.0 3.81e-01 100.0% 64.0%
5079481 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 46.0 3.20e-01 92.0% 24.0%
3497397 395.1.1.0 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.61 49.0 4.30e-01 90.0% 60.0%
3984883 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.61 46.0 3.72e-01 94.0% 38.3%
3235699 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 47.0 3.62e-01 98.0% 38.3%
3515143 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.60 45.0 3.52e-01 96.0% 35.2%
3252048 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 49.0 3.70e-01 98.0% 66.7%
3519601 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 51.0 3.92e-01 100.0% 50.8%
3524525 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.58 48.0 3.24e-01 98.0% 22.3%
4008870 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 49.0 2.93e-01 100.0% 14.6%
3244569 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 47.0 4.05e-01 100.0% 55.3%
3507463 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 3.48e-01 88.0% 85.2%
3791610 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 3.80e-01 94.0% 70.0%
5040130 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 50.0 4.15e-01 100.0% 83.3%
3419015 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 4.60e-01 96.0% 96.0%
4306567 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.57 43.0 2.68e-01 94.0% 61.3%
3688158 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 44.0 3.56e-01 100.0% 42.4%
3849982 109.6.1.2 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.56 47.0 2.75e-01 98.0% 86.5%
3446187 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.56 46.0 3.36e-01 96.0% 34.7%
4890222 109.21.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.56 44.0 2.44e-01 92.0% 6.3%
3993255 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.14e-01 92.0% 100.0%
3916711 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.55 42.0 2.55e-01 88.0% 19.3%
3905481 109.25.1.0 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.55 46.0 3.19e-01 100.0% 26.5%
2394565 9.30.1.1 beta barrels › Lipocalins/Streptavidin › PknI kinase extracellular sensor domain › PknI kinase extracellular sensor domain › PF31220 0.55 42.0 3.18e-01 98.0% 30.2%
3551338 103.4.1.28 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_C 0.55 42.0 3.37e-01 98.0% 40.0%
3486075 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 40.0 3.47e-01 92.0% 50.0%
4978199 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.64e-01 94.0% 65.0%
3944524 295.1.1.26 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › BssS 0.53 45.0 4.10e-01 98.0% 71.4%
3488319 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 2.61e-01 100.0% 30.4%
3261759 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.71e-01 92.0% 75.3%
5059871 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 2.95e-01 90.0% 38.8%
4974394 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.82e-01 92.0% 84.0%
3782121 3435.1.1.2 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.53 43.0 3.17e-01 100.0% 33.3%
4003483 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 44.0 2.73e-01 98.0% 23.7%
4023778 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.52 44.0 2.66e-01 98.0% 20.3%
3237482 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.52 39.0 2.91e-01 90.0% 45.2%
3301223 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 44.0 2.60e-01 100.0% 18.4%
3738615 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.51 42.0 3.25e-01 92.0% 67.0%
None 0.51 38.0 2.43e-01 90.0% 14.5%
3863975 4044.1.1.24 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Med15_C 0.51 41.0 3.32e-01 96.0% 43.6%
3400681 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 38.0 2.88e-01 90.0% 43.8%
3911517 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 38.0 2.70e-01 90.0% 35.0%
3876698 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 42.0 3.82e-01 92.0% 95.7%
2885155 109.21.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.50 39.0 2.22e-01 94.0% 6.7%