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NC_024216.1__YP_009037137.1__FP74_gp125__00234
Bact-VirNC_024216.1__YP_009037137.1__FP74_gp125__00234
Identity
- Accession:
- NC_024216 ↗
- Kingdom:
- phage
Quality
63.5
mean pLDDT
Taxonomy
TaxID: 1486657
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-68
D2
medium
residues 87-139
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.76 | 56.0 | 3.97e-01 | 79.2% | 33.8% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.73 | 58.0 | 3.72e-01 | 92.5% | 58.5% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 50.0 | 4.67e-01 | 73.6% | 61.2% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 47.0 | 3.93e-01 | 73.6% | 43.0% |
| 1dvpA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.68 | 57.0 | 4.34e-01 | 100.0% | 48.6% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 56.0 | 4.46e-01 | 98.1% | 74.4% |
| 8gpvA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.67 | 54.0 | 4.12e-01 | 90.6% | 37.2% |
| 1qsaA02 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.66 | 54.0 | 5.04e-01 | 98.1% | 77.1% |
| 3ppuB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 52.0 | 4.25e-01 | 100.0% | 69.0% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.62 | 50.0 | 4.23e-01 | 98.1% | 84.3% |
| 2qmaA01 | 1.20.1650.10 | Mainly Alpha › Up-down Bundle › PLP-dependent transferase-like › PLP-dependent transferases | 0.61 | 42.0 | 3.58e-01 | 71.7% | 44.2% |
| 6m90A01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.61 | 50.0 | 4.19e-01 | 96.2% | 79.8% |
| 2yjgA01 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.60 | 43.0 | 3.09e-01 | 81.1% | 24.3% |
| 1f81A00 | 1.20.1020.10 | Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain | 0.59 | 50.0 | 4.28e-01 | 96.2% | 94.3% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 41.0 | 4.07e-01 | 73.6% | 78.6% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.59 | 46.0 | 4.20e-01 | 98.1% | 90.2% |
| 1uajA02 | 1.10.1270.20 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 | 0.58 | 41.0 | 3.82e-01 | 86.8% | 57.5% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 39.0 | 3.22e-01 | 71.7% | 38.1% |
| 4c3eM00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.54 | 39.0 | 2.98e-01 | 83.0% | 29.0% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.54 | 39.0 | 3.31e-01 | 83.0% | 43.7% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.54 | 45.0 | 3.42e-01 | 100.0% | 47.9% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.50 | 40.0 | 3.59e-01 | 100.0% | 66.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3527809 | 3291.1.1.11 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Smoothelin | 0.76 | 65.0 | 4.82e-01 | 100.0% | 37.8% |
| 3658567 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.73 | 62.0 | 5.72e-01 | 100.0% | 88.6% |
| 4944941 | 605.1.1.362 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF30840 | 0.70 | 48.0 | 3.34e-01 | 71.7% | 24.6% |
| 3224003 | 9001.1.1.3 ↗ | alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMPIT | 0.70 | 49.0 | 4.31e-01 | 75.5% | 90.0% |
| 3249620 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.64 | 48.0 | 2.72e-01 | 84.9% | 10.7% |
| 4929490 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.61 | 48.0 | 4.08e-01 | 92.5% | 89.5% |
| 3749862 | 605.1.1.178 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › TMEM215 | 0.58 | 40.0 | 3.84e-01 | 73.6% | 63.3% |
| 3192821 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 48.0 | 3.07e-01 | 100.0% | 83.3% |
| 1066185 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.57 | 42.0 | 4.19e-01 | 90.6% | 77.8% |
| 3686790 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.56 | 46.0 | 3.22e-01 | 100.0% | 31.2% |
| 3420557 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.56 | 44.0 | 3.16e-01 | 88.7% | 79.4% |
| 5050057 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.56 | 42.0 | 2.74e-01 | 90.6% | 17.8% |
| 3342126 | 931.1.1.14 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › VDE | 0.51 | 39.0 | 3.59e-01 | 88.7% | 68.0% |
| 3656398 | 3444.1.1.6 ↗ | alpha arrays › DP domain › DP domain › DP domain › VDE | 0.51 | 38.0 | 3.61e-01 | 88.7% | 72.9% |