←Back to structures

NC_024217.1__YP_009037311.1__GJ22_gp031__00121

Bact-Vir

NC_024217.1__YP_009037311.1__GJ22_gp031__00121

Identity

Accession:
NC_024217 ↗
Kingdom:
phage

Quality

50.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitrincola_phage_1M3-16

TaxID: 1472912

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 944-1051
PDB
D2 medium residues 20-122
PDB
D3 medium residues 148-236
PDB
D4 medium residues 277-326
PDB
D5 medium residues 327-455
PDB
Domain cluster: rep: EU849489.1__ACJ24742.1__X__00018__D261-414
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06791.19 best TMP_2 31.4 2.20e-07 76.0% 46.2%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 28.0 3.48e-01 94.6% 64.1%
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 3.84e-01 72.1% 91.9%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.58 28.0 3.05e-01 86.8% 51.4%
4ys0A02 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.53 36.0 3.34e-01 94.6% 53.5%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.52 38.0 3.76e-01 79.8% 69.9%
4ezcB00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.52 46.0 3.40e-01 99.2% 44.8%
3k3fA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.51 45.0 3.41e-01 100.0% 44.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941716 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.76 52.0 5.21e-01 93.0% 69.2%
3164789 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.76 70.0 6.40e-01 100.0% 86.7%
3980709 103.4.1.27 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TMP_2 0.73 66.0 6.14e-01 98.4% 81.9%
4032310 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.67 56.0 5.31e-01 99.2% 75.3%
4269573 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 44.0 5.00e-01 85.3% 89.5%
4030882 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.64 57.0 4.87e-01 97.7% 72.9%
5023711 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.58 40.0 3.36e-01 72.1% 64.3%
5056169 3352.1.1.15 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › GT87 0.57 45.0 3.33e-01 83.7% 76.0%
4927292 5049.1.2.1 ↗ alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Urea transporter › UT 0.53 47.0 3.55e-01 100.0% 61.7%
3921797 5049.1.2.1 ↗ alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Urea transporter › UT 0.52 45.0 3.38e-01 100.0% 54.7%
5052392 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.51 38.0 3.99e-01 76.0% 94.8%
3216493 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 42.0 3.51e-01 91.5% 68.3%