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NC_024330.1__YP_009042218.1__HF68_gp39__00039
Bact-VirNC_024330.1__YP_009042218.1__HF68_gp39__00039
Identity
- Accession:
- NC_024330 ↗
- Kingdom:
- phage
Quality
65.3
mean pLDDT
Taxonomy
TaxID: 1481224
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-88
Domain cluster:
rep: KT381864.1__ALF02055.1__vBThpSP1_016__00016__D76-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17891.7 best | FluMu_N | 29.2 | 8.10e-07 | 87.7% | 77.5% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2outA01 | 3.40.5.80 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.69 | 55.0 | 5.50e-01 | 91.2% | 89.5% |
| 2nzcB00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.64 | 52.0 | 4.70e-01 | 94.7% | 95.1% |
| 4xcbD00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.63 | 52.0 | 3.39e-01 | 93.0% | 36.3% |
| 4oi4C01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.60 | 50.0 | 4.53e-01 | 98.2% | 85.7% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.60 | 48.0 | 4.21e-01 | 96.5% | 91.7% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.59 | 51.0 | 3.88e-01 | 100.0% | 74.5% |
| 2q1zB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 46.0 | 3.99e-01 | 89.5% | 54.8% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 48.0 | 4.17e-01 | 98.2% | 73.7% |
| 2db9A01 | 3.90.70.200 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain | 0.57 | 40.0 | 3.17e-01 | 77.2% | 97.0% |
| 4kh9A03 | 2.60.120.1370 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 3.34e-01 | 78.9% | 87.6% |
| 4qjvA03 | 3.30.70.3110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 4.56e-01 | 94.7% | 100.0% |
| 2ksvA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.56 | 47.0 | 3.41e-01 | 100.0% | 44.9% |
| 4o2tA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 44.0 | 3.23e-01 | 91.2% | 60.7% |
| 3ethA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 38.0 | 3.76e-01 | 89.5% | 67.7% |
| 2byfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 46.0 | 3.80e-01 | 100.0% | 51.4% |
| 2byeA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 45.0 | 3.85e-01 | 100.0% | 55.4% |
| 4liqE05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.46e-01 | 86.0% | 85.0% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.53 | 37.0 | 2.86e-01 | 73.7% | 59.3% |
| 1ibyA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 36.0 | 3.01e-01 | 75.4% | 55.4% |
| 6p4wB01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 37.0 | 3.20e-01 | 84.2% | 68.8% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.51 | 44.0 | 3.80e-01 | 100.0% | 81.5% |
| 1iw4A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.50 | 32.0 | 3.27e-01 | 100.0% | 65.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3458493 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.65 | 52.0 | 4.68e-01 | 93.0% | 84.7% |
| 5054677 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.63 | 53.0 | 4.87e-01 | 100.0% | 97.5% |
| 3631904 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 48.0 | 4.10e-01 | 93.0% | 49.5% |
| 4245469 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.61 | 51.0 | 3.70e-01 | 98.2% | 65.7% |
| 4169249 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 45.0 | 4.69e-01 | 84.2% | 97.9% |
| 3609153 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.60 | 45.0 | 3.77e-01 | 87.7% | 45.2% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.60 | 43.0 | 4.59e-01 | 89.5% | 100.0% |
| 3608412 | 10.34.1.0 ↗ | beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain | 0.60 | 49.0 | 4.41e-01 | 91.2% | 66.3% |
| 4887861 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.60 | 43.0 | 3.16e-01 | 77.2% | 86.2% |
| 4886417 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.60 | 50.0 | 3.74e-01 | 98.2% | 78.1% |
| 4413989 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 49.0 | 4.06e-01 | 94.7% | 53.3% |
| 3934214 | 10.12.1.86 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_NOL9 | 0.59 | 49.0 | 3.69e-01 | 96.5% | 63.3% |
| 3988077 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.62e-01 | 98.2% | 97.1% |
| 3743353 | 10.34.1.0 ↗ | beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain | 0.59 | 48.0 | 3.83e-01 | 94.7% | 48.8% |
| 3510479 | 10.34.1.0 ↗ | beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain | 0.58 | 46.0 | 4.05e-01 | 91.2% | 75.6% |
| 3275833 | 10.12.1.86 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_NOL9 | 0.57 | 45.0 | 3.46e-01 | 89.5% | 69.3% |
| 3762673 | 10.12.1.86 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_NOL9 | 0.57 | 47.0 | 3.49e-01 | 98.2% | 58.2% |
| 4024678 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 45.0 | 4.04e-01 | 91.2% | 63.5% |
| 4608056 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.57 | 46.0 | 2.98e-01 | 94.7% | 22.8% |
| 4933005 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.56 | 43.0 | 4.31e-01 | 87.7% | 83.3% |
| 4349096 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.56 | 40.0 | 3.01e-01 | 77.2% | 46.7% |
| 3764403 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.54 | 38.0 | 2.99e-01 | 75.4% | 54.8% |
| None | — | 0.54 | 40.0 | 2.25e-01 | 82.5% | 77.6% | |
| 4578557 | 205.1.1.41 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_10 | 0.53 | 42.0 | 3.62e-01 | 98.2% | 74.5% |
| None | — | 0.53 | 36.0 | 2.00e-01 | 71.9% | 13.2% | |
| 5062610 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.53 | 42.0 | 3.80e-01 | 98.2% | 86.7% |
| 5017004 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.52 | 43.0 | 3.02e-01 | 100.0% | 55.8% |
| 3266172 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.99e-01 | 91.2% | 75.7% |
| 3990294 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 45.0 | 4.06e-01 | 100.0% | 91.3% |
| 3401568 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.51 | 41.0 | 3.74e-01 | 93.0% | 88.7% |
| 3989524 | 304.147.1.1 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N | 0.51 | 40.0 | 4.04e-01 | 93.0% | 96.4% |
| 3961990 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.51 | 41.0 | 3.82e-01 | 94.7% | 70.7% |
| 3891892 | 11.1.1.351 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD | 0.50 | 37.0 | 3.20e-01 | 87.7% | 83.6% |