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NC_024356.1__YP_009042710.1__IME_062__00062

Bact-Vir

NC_024356.1__YP_009042710.1__IME_062__00062

Identity

Accession:
NC_024356 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Efemunavirus› Enterococcus_phage_IME-EFm1

TaxID: 1445858

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.16e-01 100.0% 61.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.25e-01 100.0% 86.2%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 36.0 2.99e-01 100.0% 32.2%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.60 41.0 2.83e-01 72.7% 43.4%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 41.0 3.35e-01 74.2% 59.4%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.68e-01 87.9% 63.0%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.58 37.0 3.46e-01 75.8% 50.6%
2k5qA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.57 41.0 3.56e-01 80.3% 47.6%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 43.0 3.83e-01 86.4% 86.7%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.82e-01 89.4% 94.6%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.67e-01 87.9% 79.8%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 3.66e-01 87.9% 80.9%
7l1rG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.54 43.0 3.16e-01 93.9% 83.4%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 42.0 4.01e-01 100.0% 73.5%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.59e-01 90.9% 74.8%
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.51 38.0 2.31e-01 83.3% 16.9%
1e25A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 2.76e-01 92.4% 54.7%
2ewvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 35.0 2.50e-01 75.8% 85.1%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 38.0 2.95e-01 86.4% 73.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.79 68.0 6.92e-01 100.0% 95.4%
4163661 4.1.1.446 ↗ beta barrels › SH3 › SH3 › SH3 › PF30222 0.74 58.0 5.80e-01 100.0% 82.4%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.35e-01 100.0% 92.0%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.73 65.0 6.43e-01 100.0% 95.7%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.72 65.0 6.27e-01 100.0% 92.0%
3282305 4187.1.1.0 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like 0.68 42.0 4.11e-01 100.0% 58.6%
5048876 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.64 39.0 3.93e-01 100.0% 61.5%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.18e-01 100.0% 88.6%
4109046 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 53.0 4.87e-01 100.0% 81.2%
5070306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.55e-01 100.0% 80.0%
3249789 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.70e-01 87.9% 93.8%
3939348 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 44.0 3.77e-01 83.3% 95.5%
3729338 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.57 41.0 2.50e-01 80.3% 63.4%
5077402 2007.15.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase 0.53 48.0 3.46e-01 100.0% 44.9%
3273446 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.49e-01 86.4% 96.4%
3597028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.22e-01 95.5% 90.8%
3875549 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 38.0 2.81e-01 80.3% 92.3%
3495764 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 32.0 2.38e-01 98.5% 21.6%
3252861 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 37.0 2.65e-01 78.8% 84.7%
4047429 3281.1.1.3 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.51 38.0 2.27e-01 84.8% 38.9%
3970006 246.1.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase 0.51 33.0 2.31e-01 72.7% 17.0%
2512960 7519.1.1.1 ↗ a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt 0.51 38.0 2.87e-01 86.4% 76.4%
5049756 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.24e-01 77.3% 88.4%
3890428 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.50 35.0 2.61e-01 87.9% 26.7%