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NC_024387.1__YP_009044852.1__LP101_051__00051

Bact-Vir

NC_024387.1__YP_009044852.1__LP101_051__00051

Identity

Accession:
NC_024387 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Slepowronvirus› Listeria_phage_LP-101

TaxID: 1458856

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-87
PDB
Domain cluster: rep: MK075005.1__AZB66778.1__X__00032__D3-66
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.73 49.0 4.13e-01 93.7% 42.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 40.0 4.34e-01 87.3% 72.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 41.0 4.41e-01 87.3% 82.1%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.14e-01 100.0% 74.6%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 36.0 3.01e-01 86.1% 34.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.22e-01 100.0% 85.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.52e-01 94.9% 78.0%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.60e-01 94.9% 86.3%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 3.98e-01 100.0% 73.6%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.58 39.0 4.24e-01 100.0% 87.3%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.25e-01 96.2% 74.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.47e-01 82.3% 88.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 4.12e-01 98.7% 87.1%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 4.19e-01 91.1% 90.2%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.03e-01 94.9% 19.6%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 37.0 4.20e-01 100.0% 98.1%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.57 46.0 3.82e-01 92.4% 64.0%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.07e-01 94.9% 40.2%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 46.0 3.19e-01 92.4% 50.5%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.55 42.0 4.47e-01 91.1% 94.3%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 34.0 2.81e-01 86.1% 32.2%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 36.0 3.75e-01 96.2% 74.6%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.55e-01 96.2% 80.8%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 30.0 3.45e-01 77.2% 83.7%
3ec7A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 3.51e-01 92.4% 53.3%
4fpvB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 40.0 2.83e-01 82.3% 28.8%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 33.0 3.53e-01 72.2% 74.6%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 4.07e-01 91.1% 100.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.92e-01 100.0% 42.2%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.22e-01 97.5% 83.5%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.54e-01 97.5% 47.6%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.94e-01 93.7% 24.2%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.92e-01 100.0% 98.4%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 43.0 3.01e-01 94.9% 83.8%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 43.0 3.96e-01 94.9% 87.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 41.0 3.45e-01 86.1% 78.5%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.28e-01 77.2% 75.9%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.61e-01 88.6% 65.5%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 41.0 2.80e-01 92.4% 42.4%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968862 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 40.0 4.92e-01 88.6% 100.0%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 5.07e-01 97.5% 100.0%
1171960 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.68 48.0 4.89e-01 92.4% 75.6%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 44.0 5.00e-01 70.9% 88.3%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 49.0 4.76e-01 77.2% 92.0%
3952939 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.63 53.0 5.41e-01 93.7% 96.0%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.62 41.0 4.51e-01 100.0% 84.4%
3958768 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 5.31e-01 93.7% 98.8%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.54e-01 100.0% 81.4%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.38e-01 100.0% 92.7%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.53e-01 100.0% 71.6%
3308887 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.60 51.0 3.24e-01 93.7% 32.5%
3495949 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 41.0 3.96e-01 86.1% 63.3%
3255344 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.58 49.0 4.34e-01 94.9% 85.0%
4030728 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.58 46.0 2.94e-01 93.7% 18.4%
2675820 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.58 38.0 3.69e-01 100.0% 58.2%
3612952 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 49.0 3.89e-01 97.5% 53.5%
3178564 5.1.4.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.57 49.0 3.13e-01 93.7% 37.0%
3626173 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.14e-01 91.1% 32.6%
3741358 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.46e-01 93.7% 53.6%
3414555 5.1.4.30 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL 0.57 49.0 2.78e-01 94.9% 22.4%
4608521 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.57 48.0 3.54e-01 92.4% 73.0%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.69e-01 94.9% 90.0%
4002892 109.4.1.2561 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FATC 0.56 41.0 2.53e-01 93.7% 10.6%
4373440 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 40.0 3.71e-01 73.4% 95.8%
3512816 5.1.4.313 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.56 48.0 3.06e-01 92.4% 24.6%
3385264 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.56 48.0 2.99e-01 94.9% 34.3%
3906768 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 46.0 4.08e-01 97.5% 74.4%
3459413 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.55 49.0 3.05e-01 96.2% 25.0%
3661102 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 32.0 3.69e-01 88.6% 81.8%
3377650 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 3.27e-01 93.7% 29.1%
3715886 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 2.93e-01 91.1% 36.8%
3423537 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 46.0 2.96e-01 96.2% 72.0%
4667221 2003.1.2.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.54 47.0 3.56e-01 96.2% 80.9%
3960054 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.54 42.0 3.04e-01 83.5% 54.1%
3477607 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 2.60e-01 93.7% 34.1%
4988107 283.2.1.9 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.53 42.0 3.77e-01 84.8% 73.6%
3645007 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 43.0 4.27e-01 88.6% 96.5%
4632722 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 46.0 3.29e-01 100.0% 68.6%
3601982 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.86e-01 92.4% 39.7%
3707788 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 3.18e-01 93.7% 41.3%
3577957 5.1.3.99 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FG-GAP_3 0.51 42.0 2.76e-01 93.7% 35.1%
3309559 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.50 42.0 2.89e-01 91.1% 42.6%