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NC_024392.1__YP_009045127.1__LP114_073__00072
Bact-VirNC_024392.1__YP_009045127.1__LP114_073__00072
Identity
- Accession:
- NC_024392 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Taxonomy
TaxID: 1458857
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-91
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 53.0 | 4.37e-01 | 80.0% | 84.4% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.70 | 51.0 | 3.75e-01 | 76.7% | 64.4% |
| 2felA00 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.62 | 50.0 | 3.36e-01 | 86.7% | 81.6% |
| 3kq5A01 | 1.10.3210.40 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.56 | 40.0 | 3.06e-01 | 75.6% | 66.5% |
| 7cr6D02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.56 | 43.0 | 3.33e-01 | 84.4% | 62.4% |
| 4gc8B00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.55 | 43.0 | 3.51e-01 | 85.6% | 85.1% |
| 4gvbB00 | 3.30.70.440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit | 0.51 | 38.0 | 4.15e-01 | 96.7% | 95.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005635 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.78 | 46.0 | 5.72e-01 | 82.2% | 96.4% |
| 5035899 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.73 | 52.0 | 4.29e-01 | 74.4% | 73.1% |
| 5060134 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.72 | 54.0 | 4.54e-01 | 78.9% | 84.0% |
| 5075398 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.71 | 53.0 | 4.34e-01 | 78.9% | 78.8% |
| 4990419 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.70 | 51.0 | 4.17e-01 | 75.6% | 73.8% |
| 184584 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.70 | 52.0 | 4.27e-01 | 78.9% | 79.3% |
| 4956617 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.70 | 52.0 | 4.30e-01 | 78.9% | 81.2% |
| 5024349 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.70 | 52.0 | 4.28e-01 | 78.9% | 84.4% |
| 4995193 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.68 | 49.0 | 4.07e-01 | 74.4% | 76.7% |
| 5049022 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.65 | 47.0 | 3.93e-01 | 75.6% | 76.8% |
| 3662563 | 11.1.1.887 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMM62 | 0.63 | 41.0 | 3.75e-01 | 94.4% | 51.3% |
| 3853305 | 712.1.1.0 ↗ | beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain | 0.62 | 55.0 | 4.59e-01 | 97.8% | 100.0% |
| 3604998 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.55 | 47.0 | 3.72e-01 | 94.4% | 83.2% |
| 3929637 | 382.1.1.23 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29371 | 0.52 | 42.0 | 3.78e-01 | 91.1% | 92.5% |
| 4995059 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.52 | 44.0 | 3.01e-01 | 95.6% | 58.7% |