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NC_024786.1__YP_009055578.1__LD33_gp67__00073
Bact-VirNC_024786.1__YP_009055578.1__LD33_gp67__00073
Identity
- Accession:
- NC_024786 ↗
- Kingdom:
- phage
Quality
57.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Gamaleyavirus›
Escherichia_phage_vB_EcoP_PhAPEC5
TaxID: 1395983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 221-292
Domain cluster:
rep: NC_048757.1__YP_009844859.1__HWC13_gp050__00050__D47-115
D2
high
residues 305-373
Domain cluster:
rep: NC_024142.2__YP_009031970.1__EpBp4_0011__00010__D324-397
D3
high
residues 406-473
Domain cluster:
rep: MH719082.1__AXY86119.1__X__00064__D210-266
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oj5A02 | 2.10.10.80 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.85 | 65.0 | 6.42e-01 | 79.4% | 80.3% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 50.0 | 3.59e-01 | 100.0% | 94.2% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.55 | 35.0 | 3.80e-01 | 88.2% | 84.3% |
| 1z7mC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 48.0 | 3.17e-01 | 100.0% | 88.7% |
| 6nrzA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 48.0 | 3.05e-01 | 100.0% | 83.7% |
| 1jcuA00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.53 | 37.0 | 2.70e-01 | 73.5% | 55.3% |
| 2o8bA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.52 | 43.0 | 4.04e-01 | 100.0% | 74.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2442382 | 3856.1.1.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Tail_spike_N | 0.83 | 63.0 | 4.43e-01 | 80.9% | 29.7% |
| 4014338 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.51 | 43.0 | 2.79e-01 | 100.0% | 91.5% |
| 4662943 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.51 | 40.0 | 3.03e-01 | 89.7% | 35.2% |
D4
medium
residues 136-206
Domain cluster:
rep: ON148528.1__UPO42306.1__Kp11_45__00045__D194-275
D5
medium
residues 477-596_616-651
D6
medium
residues 652-821