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NC_024790.1__YP_009056136.1__LD35_gp07__00007

Bact-Vir

NC_024790.1__YP_009056136.1__LD35_gp07__00007

Identity

Accession:
NC_024790 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Escherichia_phage_vB_EcoP_PhAPEC7

TaxID: 1391223

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: rep: KX523699.2__ANW46751.1__X__00050__D2-70
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.70 45.0 3.28e-01 72.0% 24.6%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.66 53.0 4.27e-01 86.7% 61.0%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.64 44.0 3.08e-01 72.0% 37.5%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 49.0 3.84e-01 84.0% 53.2%
1wzvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 49.0 3.91e-01 85.3% 54.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.62 46.0 3.90e-01 78.7% 80.6%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.61 46.0 3.71e-01 100.0% 41.2%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 45.0 3.55e-01 78.7% 46.4%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.60 46.0 3.94e-01 85.3% 97.7%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.31e-01 80.0% 56.8%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 43.0 3.49e-01 76.0% 58.6%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.58 43.0 3.93e-01 77.3% 100.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 4.17e-01 72.0% 95.8%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.58 46.0 4.36e-01 88.0% 78.3%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.15e-01 96.0% 70.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 4.15e-01 70.7% 87.5%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.37e-01 98.7% 86.3%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.57 45.0 3.76e-01 86.7% 80.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 40.0 3.71e-01 81.3% 58.0%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 38.0 3.88e-01 76.0% 76.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.55 38.0 4.22e-01 72.0% 96.5%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.18e-01 96.0% 94.5%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.55 38.0 3.64e-01 73.3% 63.3%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 4.00e-01 77.3% 89.2%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.08e-01 76.0% 42.9%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 39.0 3.97e-01 84.0% 80.3%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.41e-01 90.7% 51.9%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.54e-01 89.3% 73.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 43.0 2.87e-01 96.0% 58.9%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 44.0 2.95e-01 98.7% 73.5%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 42.0 3.39e-01 92.0% 58.2%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 45.0 3.68e-01 100.0% 77.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 4.05e-01 96.0% 88.3%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 4.00e-01 90.7% 83.6%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 39.0 2.53e-01 85.3% 26.6%
4j4hA01 3.40.50.12150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.99e-01 82.7% 40.7%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 44.0 3.71e-01 100.0% 62.5%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.28e-01 89.3% 84.6%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.47e-01 82.7% 86.4%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.50 39.0 3.41e-01 89.3% 81.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3956791 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.70 55.0 4.30e-01 84.0% 69.9%
3949576 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.66 51.0 4.04e-01 84.0% 65.0%
2426920 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.65 45.0 5.05e-01 78.7% 98.2%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.64 45.0 4.79e-01 76.0% 84.6%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.64 45.0 4.69e-01 80.0% 80.0%
3390942 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.64 50.0 4.44e-01 85.3% 72.7%
1158445 10.32.1.45 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4465 0.64 44.0 3.08e-01 72.0% 37.5%
3959660 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 49.0 4.00e-01 85.3% 74.8%
4987226 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.62 48.0 3.87e-01 84.0% 64.0%
3991437 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.62 42.0 3.01e-01 70.7% 31.6%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.01e-01 85.3% 93.8%
3059869 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.62 47.0 3.98e-01 82.7% 61.7%
3492352 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.61 48.0 4.29e-01 84.0% 69.5%
4801232 216.1.1.5 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › BRE 0.61 47.0 3.98e-01 84.0% 63.8%
3519600 216.1.1.5 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › BRE 0.60 44.0 3.82e-01 78.7% 73.3%
5013748 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 43.0 3.19e-01 76.0% 36.6%
3283627 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.60 44.0 3.60e-01 80.0% 69.3%
3584527 216.1.1.9 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 0.60 44.0 3.93e-01 81.3% 55.7%
4155197 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.60 41.0 3.04e-01 70.7% 39.5%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.58e-01 81.3% 85.7%
3816553 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.59 39.0 4.44e-01 70.7% 94.5%
3624656 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.58 43.0 4.34e-01 84.0% 80.0%
3845351 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 43.0 4.10e-01 80.0% 66.7%
3850814 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.58 49.0 3.03e-01 96.0% 53.8%
4015773 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.58 44.0 4.06e-01 84.0% 77.0%
4942634 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.58 47.0 4.26e-01 92.0% 91.4%
5023784 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 38.0 4.13e-01 84.0% 83.3%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 39.0 3.96e-01 80.0% 70.7%
5041343 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 39.0 3.98e-01 72.0% 100.0%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.57 40.0 4.25e-01 76.0% 96.9%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.57 38.0 4.29e-01 74.7% 94.5%
3978756 3197.1.1.1 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.57 49.0 4.26e-01 100.0% 70.0%
3430171 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 44.0 2.76e-01 85.3% 17.5%
3173480 3755.4.1.28 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Kre28 0.56 42.0 4.06e-01 82.7% 87.8%
5045363 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.56 43.0 2.86e-01 85.3% 46.4%
3315471 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.56 41.0 3.93e-01 76.0% 67.1%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.56 41.0 3.93e-01 80.0% 71.1%
3416044 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 42.0 3.77e-01 81.3% 87.6%
3512143 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.19e-01 80.0% 89.2%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.54 43.0 3.97e-01 88.0% 76.0%
3167601 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.54 41.0 3.87e-01 84.0% 81.1%
3684567 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.54 36.0 3.79e-01 84.0% 80.0%
3585692 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.54 40.0 3.32e-01 82.7% 50.0%
None — 0.54 40.0 3.93e-01 82.7% 88.2%
3331262 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.53 41.0 3.82e-01 84.0% 81.1%
3510207 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 45.0 3.40e-01 96.0% 52.6%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.53 42.0 4.14e-01 89.3% 88.7%
3964608 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.53 40.0 4.09e-01 92.0% 90.0%
4014359 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 38.0 2.67e-01 76.0% 50.6%
3547089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 41.0 3.89e-01 92.0% 71.1%
3802876 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 42.0 2.84e-01 90.7% 99.4%
3974565 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.52 37.0 3.97e-01 80.0% 87.7%
3486271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.95e-01 90.7% 72.2%
3356591 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.71e-01 86.7% 65.3%
3508956 5.1.3.158 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_HCF 0.51 43.0 2.83e-01 97.3% 78.7%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 39.0 3.73e-01 90.7% 72.2%