Back to structures

NC_024791.1__YP_009056247.1__LD36_gp35__00035

Bact-Vir

NC_024791.1__YP_009056247.1__LD36_gp35__00035

Identity

Accession:
NC_024791 ↗
Kingdom:
phage

Quality

58.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-79
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.74 43.0 4.27e-01 93.7% 56.0%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.71 56.0 4.55e-01 83.5% 54.7%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 55.0 3.58e-01 86.1% 26.8%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 55.0 3.49e-01 86.1% 29.4%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 46.0 4.55e-01 98.7% 68.2%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.64 55.0 3.69e-01 93.7% 56.5%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.62 44.0 3.36e-01 73.4% 82.6%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.53e-01 92.4% 72.1%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 40.0 3.10e-01 100.0% 32.5%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 46.0 4.41e-01 79.7% 77.5%
3cnvA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.60 46.0 3.83e-01 86.1% 84.5%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 3.27e-01 89.9% 34.6%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.59 49.0 4.85e-01 91.1% 96.4%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 50.0 3.59e-01 100.0% 41.8%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.57 50.0 3.62e-01 100.0% 45.6%
1xebA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 44.0 3.55e-01 83.5% 77.9%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 44.0 3.21e-01 86.1% 54.4%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.55 45.0 3.66e-01 92.4% 65.4%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.44e-01 88.6% 67.2%
1cm0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.44e-01 84.8% 72.8%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.86e-01 100.0% 52.1%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.55 42.0 3.32e-01 83.5% 55.9%
4nxyA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.51e-01 92.4% 97.2%
3g3sA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.63e-01 87.3% 81.2%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.22e-01 83.5% 73.6%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 37.0 3.32e-01 98.7% 52.1%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 3.75e-01 87.3% 72.2%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 41.0 3.68e-01 91.1% 81.7%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.14e-01 86.1% 74.1%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.39e-01 100.0% 41.5%
6wqbA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.33e-01 84.8% 77.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934099 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.84 51.0 4.84e-01 100.0% 53.3%
3999577 4099.1.1.28 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.83 47.0 4.60e-01 100.0% 52.9%
3596915 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.81 52.0 3.05e-01 100.0% 9.1%
3707133 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.80 50.0 3.57e-01 97.5% 23.8%
3244769 4099.1.1.28 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.76 44.0 4.22e-01 100.0% 51.1%
3709736 5.1.4.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7048 0.75 61.0 3.80e-01 86.1% 22.9%
3597339 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.75 61.0 4.12e-01 86.1% 35.4%
3627177 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.74 60.0 3.85e-01 86.1% 25.7%
4972588 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.74 46.0 2.98e-01 100.0% 15.1%
3789064 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.73 59.0 3.76e-01 86.1% 22.5%
3218632 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.73 48.0 4.49e-01 100.0% 56.4%
3990496 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.73 50.0 5.27e-01 100.0% 80.0%
3478270 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.73 57.0 3.41e-01 83.5% 16.3%
3240374 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.72 58.0 3.76e-01 86.1% 35.1%
3773831 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.71 58.0 3.38e-01 87.3% 12.6%
4015961 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 62.0 3.74e-01 92.4% 37.6%
3611446 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 57.0 3.80e-01 86.1% 31.3%
3719566 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 57.0 3.77e-01 86.1% 28.7%
3903552 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.71 57.0 3.63e-01 86.1% 31.1%
3266581 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.71 56.0 3.48e-01 86.1% 21.1%
3276895 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 60.0 3.73e-01 92.4% 27.4%
4023269 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.69 52.0 4.60e-01 100.0% 56.4%
3240086 5.1.5.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N 0.69 53.0 3.42e-01 83.5% 18.9%
3913372 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.69 55.0 3.58e-01 86.1% 37.0%
3743129 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.68 42.0 3.87e-01 98.7% 47.6%
3599747 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.68 54.0 3.54e-01 86.1% 29.9%
3488069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 54.0 3.40e-01 86.1% 27.9%
3254772 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 46.0 3.33e-01 70.9% 71.2%
2095503 3146.1.1.1 a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.67 47.0 2.85e-01 73.4% 32.8%
3387108 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.67 50.0 4.11e-01 78.5% 94.2%
3616618 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 56.0 3.55e-01 92.4% 22.1%
4001680 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 42.0 4.11e-01 100.0% 59.1%
5014493 331.3.1.12 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.65 43.0 3.06e-01 100.0% 23.5%
3279135 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 51.0 3.43e-01 83.5% 23.1%
4946053 4237.1.1.0 beta barrels › FomD-like › FomD-like › FomD-like 0.65 60.0 4.70e-01 100.0% 51.6%
4451770 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.65 59.0 4.55e-01 100.0% 47.3%
4028413 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.37e-01 89.9% 41.8%
3784883 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.29e-01 84.8% 26.6%
3264341 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.63 53.0 3.54e-01 93.7% 27.4%
3259865 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.26e-01 86.1% 35.3%
3193239 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.62 53.0 3.25e-01 92.4% 24.9%
3624211 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 48.0 3.74e-01 94.9% 39.4%
3474457 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 52.0 4.92e-01 92.4% 84.2%
5001279 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.61 43.0 2.81e-01 75.9% 16.6%
3812869 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 47.0 4.34e-01 81.0% 79.0%
134104 9.1.1.22 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3642 0.61 46.0 4.41e-01 79.7% 77.5%
4463771 3347.1.1.0 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 0.60 48.0 4.37e-01 100.0% 64.8%
None 0.60 54.0 3.22e-01 98.7% 30.3%
5043414 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.60 47.0 3.92e-01 83.5% 62.2%
2027 12.3.1.17 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › RhgB_N 0.59 52.0 3.68e-01 100.0% 42.4%
3482303 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 49.0 3.23e-01 92.4% 24.8%
5013238 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.38e-01 93.7% 70.0%
5057458 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 49.0 3.56e-01 91.1% 80.5%
3782222 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.80e-01 91.1% 45.2%
3188851 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.57 41.0 3.72e-01 75.9% 90.0%
1395707 5084.5.1.16 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BVU_2266-like 0.57 50.0 3.62e-01 100.0% 45.6%
3868717 220.1.1.173 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.56 47.0 4.13e-01 92.4% 69.2%
3223040 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.56 47.0 3.38e-01 96.2% 47.8%
119302 3146.1.1.0 a+b complex topology › gH main domain › gH main domain › gH main domain 0.56 44.0 2.90e-01 84.8% 80.4%
4977715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.33e-01 96.2% 75.7%
2130268 4099.1.1.7 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Ctf19_RWD1 0.54 34.0 3.41e-01 84.8% 58.8%
4989818 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 43.0 3.23e-01 91.1% 43.6%
2549340 3735.1.1.5 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TTc_toxin_rep 0.54 48.0 2.81e-01 100.0% 53.6%
3700490 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.53 48.0 3.05e-01 100.0% 97.3%
5022939 2484.1.1.23 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A 0.52 42.0 3.73e-01 91.1% 100.0%
3601210 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 47.0 2.99e-01 100.0% 97.8%
4115428 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.51 45.0 3.47e-01 98.7% 75.6%
4195739 213.1.1.46 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › CFAP61_N 0.50 38.0 2.95e-01 81.0% 77.7%
3864560 213.1.1.46 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › CFAP61_N 0.50 38.0 2.91e-01 82.3% 78.4%
D2 medium residues 80-163
PDB