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NC_024792.1__YP_009056275.1__LD13_gp006__00006
Bact-VirNC_024792.1__YP_009056275.1__LD13_gp006__00006
Identity
- Accession:
- NC_024792 ↗
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Taxonomy
TaxID: 1527469
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-121
Domain cluster:
rep: ON366411.1__USL89399.1__vBBceHLY2_00123__00123__D173-286
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.77 | 34.0 | 4.32e-01 | 72.9% | 70.3% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.67 | 37.0 | 4.03e-01 | 81.3% | 63.7% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.60 | 32.0 | 4.06e-01 | 82.2% | 91.5% |
| 3edpA02 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.56 | 43.0 | 3.92e-01 | 82.2% | 93.2% |
| 2wzoA01 | 3.30.160.360 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 37.0 | 3.42e-01 | 86.0% | 54.1% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 40.0 | 3.09e-01 | 75.7% | 60.7% |
| 3mnmA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.55 | 37.0 | 3.72e-01 | 96.3% | 67.0% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 39.0 | 3.34e-01 | 92.5% | 47.6% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 36.0 | 4.20e-01 | 86.0% | 96.1% |
| 1c7hA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 4.12e-01 | 85.0% | 93.5% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 3.92e-01 | 82.2% | 86.6% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.53 | 43.0 | 3.22e-01 | 85.0% | 40.0% |
| 4frxA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.53 | 39.0 | 2.68e-01 | 77.6% | 34.8% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 46.0 | 3.29e-01 | 100.0% | 90.6% |
| 4g79A00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.52 | 40.0 | 3.73e-01 | 82.2% | 97.8% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.52 | 42.0 | 3.56e-01 | 86.0% | 52.9% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.52 | 38.0 | 3.74e-01 | 75.7% | 77.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4388709 | 4.1.1.346 ↗ | beta barrels › SH3 › SH3 › SH3 › FlgH | 0.72 | 42.0 | 5.22e-01 | 78.5% | 95.4% |
| 3622366 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.67 | 33.0 | 4.53e-01 | 79.4% | 100.0% |
| 3968646 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.62 | 39.0 | 3.67e-01 | 80.4% | 52.3% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.60 | 46.0 | 4.60e-01 | 100.0% | 79.1% |
| 4021785 | 1100.1.1.0 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein | 0.60 | 48.0 | 3.70e-01 | 86.0% | 40.0% |
| 3199320 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.60 | 49.0 | 4.80e-01 | 100.0% | 80.0% |
| 4453707 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 49.0 | 3.82e-01 | 100.0% | 43.6% |
| 3435849 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 45.0 | 4.87e-01 | 93.5% | 97.7% |
| 4153442 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 50.0 | 4.81e-01 | 100.0% | 82.5% |
| 4254174 | 4099.1.1.22 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P | 0.58 | 39.0 | 3.49e-01 | 83.2% | 51.0% |
| 4483219 | 881.5.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Respiratory growth induced protein 1 › Respiratory growth induced protein 1 › RGI1 | 0.56 | 34.0 | 3.05e-01 | 80.4% | 44.1% |
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.55 | 34.0 | 3.36e-01 | 83.2% | 56.5% |
| 3073708 | 298.1.1.15 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C | 0.54 | 46.0 | 3.54e-01 | 93.5% | 99.6% |
| 3183221 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.53 | 43.0 | 3.24e-01 | 86.9% | 36.6% |
| 5083094 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 37.0 | 2.85e-01 | 72.9% | 38.8% |
| 3917054 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.53 | 43.0 | 4.14e-01 | 100.0% | 75.2% |
| 3495405 | 3131.1.1.1 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC | 0.53 | 44.0 | 3.95e-01 | 100.0% | 64.0% |
| 4344469 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.53 | 43.0 | 3.50e-01 | 86.0% | 48.4% |
| 3251181 | 883.1.1.18 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26545 | 0.53 | 42.0 | 3.55e-01 | 83.2% | 71.8% |
| 3782746 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.52 | 36.0 | 3.66e-01 | 84.1% | 70.0% |
| 3739953 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.52 | 41.0 | 3.69e-01 | 100.0% | 59.4% |
| 429242 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.52 | 42.0 | 4.00e-01 | 86.9% | 91.3% |
| 3727315 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.51 | 41.0 | 3.66e-01 | 86.0% | 60.0% |
| 4937710 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.51 | 40.0 | 3.91e-01 | 82.2% | 95.7% |
| 3909372 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.51 | 42.0 | 3.38e-01 | 88.8% | 47.3% |
| 3801133 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 40.0 | 3.82e-01 | 85.0% | 91.4% |
| 4195303 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.51 | 42.0 | 3.48e-01 | 88.8% | 52.4% |
| 3424085 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.50 | 45.0 | 3.20e-01 | 100.0% | 42.1% |