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NC_024793.1__YP_009056591.1__LD32_gp76__00075

Bact-Vir

NC_024793.1__YP_009056591.1__LD32_gp76__00075

Identity

Accession:
NC_024793 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Rogunavirus› Escherichia_phage_vB_EcoS_AHP42

TaxID: 1416028

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-70
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 49.0 4.36e-01 78.1% 82.8%
8enbA01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.66 48.0 4.39e-01 76.6% 90.4%
1fl7D00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.59 47.0 4.13e-01 93.8% 82.1%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 42.0 3.88e-01 79.7% 80.0%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 39.0 2.87e-01 75.0% 75.8%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.53 38.0 3.57e-01 78.1% 88.1%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.57e-01 92.2% 17.1%
2gj8D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.30e-01 98.4% 58.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3458655 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.75 54.0 4.53e-01 76.6% 45.4%
3056380 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.66 47.0 4.10e-01 76.6% 75.0%
5034626 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 40.0 4.64e-01 73.4% 100.0%
1162083 11.1.1.216 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_5 0.63 44.0 4.10e-01 73.4% 68.3%
4960936 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 43.0 4.06e-01 73.4% 83.7%
2990341 385.1.1.8 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN 0.61 47.0 4.26e-01 84.4% 90.9%
4960942 11.1.4.21 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF3869 0.61 43.0 4.04e-01 75.0% 82.5%
3620606 385.1.1.1 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot 0.60 46.0 4.20e-01 82.8% 91.8%
4949167 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 45.0 3.11e-01 92.2% 77.0%
4976340 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 44.0 3.59e-01 98.4% 60.0%
3581800 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 34.0 3.73e-01 70.3% 94.0%
3376010 375.3.1.1 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL 0.50 36.0 3.84e-01 95.3% 92.7%
1003777 375.3.1.1 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL 0.50 34.0 3.00e-01 70.3% 46.0%
3414868 375.3.1.1 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL 0.50 34.0 3.15e-01 70.3% 57.6%