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NC_025115.1__YP_009067124.1__MA18_gp47__00047

Bact-Vir

NC_025115.1__YP_009067124.1__MA18_gp47__00047

Identity

Accession:
NC_025115 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.69 60.0 5.46e-01 100.0% 80.4%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 50.0 5.12e-01 97.3% 91.3%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 44.0 4.23e-01 87.8% 64.7%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 51.0 3.86e-01 91.9% 85.3%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.60 48.0 4.31e-01 89.2% 77.1%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 43.0 4.08e-01 87.8% 67.4%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 43.0 3.36e-01 81.1% 69.0%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 41.0 3.80e-01 87.8% 59.2%
4lqbA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 39.0 3.28e-01 90.5% 42.3%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.56 45.0 3.80e-01 94.6% 50.0%
3wndA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 3.63e-01 95.9% 56.4%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 41.0 3.54e-01 87.8% 72.6%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 4.02e-01 90.5% 98.9%
1yarH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 43.0 3.30e-01 100.0% 70.4%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 39.0 3.53e-01 82.4% 79.8%
1xp8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.52 37.0 4.06e-01 89.2% 95.0%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.94e-01 98.6% 96.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 38.0 2.87e-01 81.1% 41.0%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.55e-01 85.1% 30.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4680318 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.70 62.0 5.86e-01 98.6% 91.1%
3880284 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.63 53.0 3.85e-01 91.9% 72.2%
3743129 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 49.0 4.45e-01 86.5% 75.2%
3476001 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.61 50.0 4.72e-01 93.2% 86.0%
5038340 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 43.0 4.29e-01 87.8% 82.7%
1320692 331.21.1.1 a+b two layers › TBP-like › Sporulation inhibitor of replication protein SirA › Sporulation inhibitor of replication protein SirA › SirA 0.56 45.0 3.80e-01 94.6% 50.0%
4427264 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.55 39.0 2.40e-01 74.3% 17.6%
3662319 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 44.0 4.30e-01 87.8% 87.5%
4347999 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.54 37.0 3.91e-01 90.5% 83.1%
5041767 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 36.0 3.29e-01 71.6% 92.4%
3282276 3735.1.1.9 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat+DUF6531 0.53 45.0 2.76e-01 100.0% 44.3%
3963980 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.50 34.0 2.80e-01 90.5% 36.4%
3981329 211.1.1.27 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ntox47 0.50 40.0 3.83e-01 91.9% 95.5%
D2 high residues 86-153
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.73 49.0 4.22e-01 70.6% 74.3%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 3.27e-01 70.6% 31.9%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.63 43.0 3.40e-01 72.1% 34.2%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.68e-01 72.1% 45.3%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 3.77e-01 70.6% 53.8%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.61 42.0 3.43e-01 72.1% 37.9%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.40e-01 75.0% 96.6%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 38.0 3.31e-01 70.6% 40.7%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 46.0 2.97e-01 86.8% 31.9%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 42.0 2.92e-01 82.4% 46.7%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 42.0 3.82e-01 79.4% 84.8%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 4.52e-01 100.0% 95.2%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 38.0 3.24e-01 73.5% 92.4%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.55 38.0 3.14e-01 95.6% 35.9%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 46.0 3.29e-01 97.1% 48.1%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 37.0 2.98e-01 100.0% 33.8%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.53 43.0 2.81e-01 91.2% 71.8%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.30e-01 83.8% 89.5%
2kgyA00 3.30.505.20 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › 0.52 45.0 4.13e-01 98.5% 94.6%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.35e-01 98.5% 92.0%
3dohA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 3.00e-01 94.1% 47.5%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 40.0 2.73e-01 89.7% 83.8%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 2.98e-01 70.6% 44.4%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.75e-01 100.0% 53.3%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 3.53e-01 88.2% 55.6%
1dleA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 3.04e-01 77.9% 71.3%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.63e-01 100.0% 40.0%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 34.0 2.86e-01 72.1% 82.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.74 50.0 4.88e-01 70.6% 72.0%
4317035 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 43.0 4.02e-01 70.6% 49.4%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 42.0 3.94e-01 70.6% 49.4%
3270288 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 44.0 3.81e-01 70.6% 44.0%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 41.0 4.19e-01 70.6% 61.5%
3881119 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 41.0 3.96e-01 70.6% 52.5%
3480657 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 44.0 3.62e-01 70.6% 58.4%
3766117 220.1.1.164 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.63 43.0 3.44e-01 70.6% 36.9%
3550157 220.1.1.164 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.61 41.0 2.98e-01 70.6% 25.3%
3993317 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 42.0 4.23e-01 73.5% 74.3%
4000199 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.60 36.0 3.47e-01 75.0% 51.2%
3169437 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 53.0 3.32e-01 100.0% 27.1%
3895620 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.60 42.0 3.26e-01 100.0% 30.9%
3765075 220.1.1.164 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.59 40.0 2.95e-01 70.6% 26.7%
4028929 6127.1.1.1 beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma 0.59 44.0 4.05e-01 80.9% 93.3%
3522681 220.1.1.164 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.57 39.0 3.06e-01 70.6% 33.1%
3996204 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 3.30e-01 73.5% 43.3%
4890224 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.56 45.0 2.76e-01 94.1% 49.5%
3262013 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.56 37.0 3.03e-01 73.5% 35.4%
3807010 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 38.0 3.01e-01 70.6% 35.0%
4827586 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.55 37.0 2.58e-01 70.6% 21.3%
4002813 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 41.0 3.30e-01 83.8% 41.4%
3935844 5.1.3.204 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7911 0.54 45.0 2.98e-01 98.5% 44.3%
3253640 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.53 45.0 3.08e-01 98.5% 37.8%
3810743 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 46.0 3.19e-01 100.0% 35.5%
4228570 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.47e-01 72.1% 71.2%
3791563 5.1.2.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF7911 0.52 43.0 2.93e-01 98.5% 47.7%
4023931 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.51 35.0 3.23e-01 77.9% 54.4%
3966949 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.51 39.0 3.67e-01 100.0% 65.6%
4028717 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.51 43.0 3.17e-01 100.0% 68.3%
4030728 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.50 42.0 2.74e-01 100.0% 32.9%
5045468 325.1.6.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.50 39.0 3.05e-01 89.7% 77.1%
3580534 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.80e-01 100.0% 28.3%
D3 high residues 798-887
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l4gB01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 39.0 3.92e-01 82.2% 74.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018482 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.93e-01 100.0% 79.0%
5029778 101.1.2.43 alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.60 41.0 4.18e-01 82.2% 71.1%
5081315 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 4.19e-01 100.0% 92.0%
D4 medium residues 157-301
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13362.13 best Toprim_3 34.6 3.00e-08 71.0% 92.6%
PF13155.13 Toprim_2 45.8 8.90e-12 66.9% 98.9%
D5 medium residues 364-469
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 30.0 4.02e-01 74.5% 71.4%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 36.0 3.06e-01 77.4% 32.2%
1twfB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.58 41.0 3.54e-01 74.5% 77.4%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 40.0 3.93e-01 71.7% 77.8%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 40.0 4.01e-01 70.8% 78.3%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 40.0 3.92e-01 71.7% 72.4%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 40.0 3.72e-01 71.7% 62.7%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 40.0 3.96e-01 71.7% 71.2%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 40.0 3.94e-01 72.6% 75.2%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.57 41.0 3.81e-01 76.4% 92.1%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 37.0 3.45e-01 74.5% 51.4%
1a8rA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.55 39.0 3.67e-01 75.5% 92.6%
3cqyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 38.0 3.18e-01 73.6% 91.3%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 41.0 3.67e-01 82.1% 93.4%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 37.0 3.51e-01 71.7% 67.5%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.52e-01 74.5% 84.2%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 44.0 3.85e-01 93.4% 87.7%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 48.0 3.26e-01 100.0% 63.7%
1w0pA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 47.0 3.18e-01 100.0% 66.3%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 40.0 3.37e-01 99.1% 48.2%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.84e-01 94.3% 90.6%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 34.0 3.48e-01 74.5% 71.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948387 1104.1.1.1 a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 0.70 63.0 5.57e-01 99.1% 69.3%
3975472 1104.1.1.1 a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 0.70 62.0 5.50e-01 99.1% 68.4%
4950455 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 33.0 4.03e-01 81.1% 70.0%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.69 34.0 3.91e-01 70.8% 63.7%
3487913 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 38.0 4.21e-01 74.5% 68.2%
3473306 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.68 38.0 4.41e-01 74.5% 77.3%
3625974 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.63 46.0 4.90e-01 75.5% 92.2%
5800 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.61 29.0 4.02e-01 74.5% 96.0%
3264336 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.59 41.0 4.44e-01 72.6% 91.1%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 41.0 3.91e-01 71.7% 72.5%
3408101 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 41.0 3.74e-01 72.6% 60.7%
1489902 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 40.0 4.01e-01 70.8% 78.3%
3591102 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.58 40.0 3.52e-01 70.8% 70.0%
3660107 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 41.0 3.75e-01 73.6% 70.0%
3747453 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 40.0 3.60e-01 71.7% 60.0%
3554073 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 39.0 3.69e-01 71.7% 64.6%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 40.0 3.70e-01 71.7% 63.8%
3800321 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 49.0 3.99e-01 97.2% 77.0%
5016440 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.55 42.0 3.87e-01 81.1% 95.7%
4983641 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.55 40.0 3.62e-01 75.5% 82.7%
3478366 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 39.0 3.92e-01 74.5% 72.4%
3725938 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.55 40.0 3.63e-01 74.5% 72.9%
4182070 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.55 39.0 3.66e-01 72.6% 67.7%
4566577 330.16.1.3 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › CEP19 0.55 38.0 4.05e-01 77.4% 80.0%
5749 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.55 39.0 3.17e-01 75.5% 57.0%
4249934 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.55 39.0 3.83e-01 75.5% 91.7%
4486857 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 38.0 3.49e-01 71.7% 63.0%
4483150 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 38.0 3.29e-01 71.7% 60.0%
3414096 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 39.0 3.65e-01 73.6% 66.2%
3789798 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 43.0 3.79e-01 84.0% 83.3%
4027440 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 37.0 3.71e-01 71.7% 75.5%
5027255 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.53 34.0 3.28e-01 76.4% 55.8%
3783181 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 38.0 3.75e-01 72.6% 72.7%
3604480 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.53 39.0 3.40e-01 79.2% 98.9%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 37.0 3.45e-01 72.6% 59.3%
3738775 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.53 38.0 3.52e-01 74.5% 64.4%
4934762 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 37.0 3.64e-01 72.6% 87.0%
3706903 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 42.0 3.72e-01 85.8% 100.0%
4641867 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.52 36.0 3.15e-01 71.7% 55.0%
3562700 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 40.0 3.74e-01 82.1% 97.8%
4014679 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 39.0 2.57e-01 78.3% 46.8%
3298618 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 35.0 3.56e-01 70.8% 95.2%
None 0.51 35.0 3.06e-01 71.7% 47.6%
3504726 2484.1.1.268 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF5641 0.50 44.0 3.34e-01 95.3% 56.1%
D6 medium residues 509-697
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svmA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 58.0 6.37e-01 84.7% 100.0%
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 65.0 6.33e-01 100.0% 86.6%
3m6aA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 55.0 6.06e-01 87.8% 98.7%
3vkgA17 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 47.0 5.68e-01 82.5% 100.0%
3t15A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 56.0 6.20e-01 89.4% 99.4%
1sxjE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 54.0 5.90e-01 89.9% 94.9%
3vkgA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 54.0 6.06e-01 85.2% 100.0%
1iqpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 53.0 5.60e-01 90.5% 88.1%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 58.0 5.88e-01 89.9% 96.8%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 57.0 5.60e-01 87.8% 98.0%
1d2nA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 55.0 5.78e-01 86.8% 93.6%
1htwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 46.0 5.03e-01 90.5% 83.5%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 61.0 4.76e-01 97.4% 51.4%
2gnoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 47.0 5.47e-01 83.1% 100.0%
2qbyB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 54.0 5.65e-01 86.2% 100.0%
2qbyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 54.0 5.64e-01 86.2% 100.0%
1jr3A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 52.0 5.43e-01 90.5% 94.3%
1a5tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 50.0 5.32e-01 87.8% 98.8%
8jx6B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 53.0 5.19e-01 93.1% 100.0%
3ewaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 53.0 4.85e-01 96.8% 94.0%
2ozeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 4.24e-01 88.9% 86.6%
6znpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 4.53e-01 86.8% 99.1%
1z3iX01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.56 46.0 4.07e-01 87.3% 100.0%
2ocaA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 39.0 3.84e-01 72.0% 100.0%
3huuC02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 36.0 4.12e-01 83.6% 91.0%
1qz9A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 40.0 3.64e-01 85.7% 54.8%
4isyA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 40.0 3.65e-01 85.2% 58.3%
3czqC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 3.99e-01 92.6% 73.2%
6ofuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 41.0 3.65e-01 80.4% 98.8%
3rhfD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.95e-01 92.6% 75.6%
4ohxA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 4.23e-01 93.1% 87.7%
7sglD01 3.40.50.12650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 4.19e-01 82.5% 100.0%
5l3qB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 4.00e-01 90.5% 93.7%
5k1rA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 40.0 3.69e-01 86.2% 63.9%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018481 2004.1.1.136 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF927 0.82 76.0 6.48e-01 100.0% 64.6%
3944606 2004.1.1.136 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF927 0.80 76.0 6.48e-01 100.0% 67.7%
5013281 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 75.0 6.43e-01 100.0% 71.6%
4926850 2004.1.1.22 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.78 59.0 6.49e-01 90.5% 94.2%
4998586 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 63.0 6.12e-01 98.9% 77.1%
4931926 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 72.0 5.99e-01 100.0% 60.0%
5064031 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 68.0 5.57e-01 100.0% 55.1%
5081314 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 67.0 5.93e-01 100.0% 67.7%
3952423 2004.1.1.339 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF3631 0.74 69.0 6.08e-01 100.0% 70.6%
4959586 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.74 68.0 5.89e-01 100.0% 65.9%
None 0.73 59.0 6.19e-01 88.4% 92.4%
4994590 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 69.0 6.62e-01 100.0% 95.2%
5011495 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 60.0 5.90e-01 92.6% 81.0%
4314819 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.72 63.0 6.29e-01 99.5% 89.2%
None 0.72 57.0 6.03e-01 87.3% 91.2%
3700658 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 52.0 6.02e-01 85.7% 100.0%
None 0.72 59.0 5.81e-01 95.2% 80.5%
5010380 2004.1.1.1014 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27228 0.72 67.0 5.55e-01 100.0% 62.5%
4507179 1.1.9.48 beta barrels › cradle loop barrel › RIFT-related › PUA domain › AAA 0.71 60.0 4.13e-01 88.9% 33.2%
3717212 2004.1.1.93 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynein_heavy 0.71 51.0 5.83e-01 86.2% 98.6%
3253892 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.71 64.0 6.35e-01 100.0% 92.8%
4943294 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.71 54.0 5.86e-01 90.5% 93.1%
4936471 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.71 58.0 5.72e-01 96.8% 81.0%
3593283 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 64.0 5.72e-01 97.4% 87.3%
4002451 2004.1.1.93 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynein_heavy 0.70 56.0 5.67e-01 93.1% 84.3%
3663724 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.70 59.0 6.19e-01 93.1% 97.1%
1788857 2004.1.1.444 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_PrkA 0.69 59.0 5.36e-01 89.9% 73.2%
5017997 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.69 58.0 4.27e-01 88.9% 36.7%
3580698 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.69 59.0 6.09e-01 89.4% 98.9%
None 0.69 59.0 4.30e-01 90.5% 35.9%
1447873 2004.1.1.500 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_6 0.69 59.0 5.99e-01 89.4% 96.2%
3290153 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.68 62.0 6.20e-01 97.4% 95.3%
3781473 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 58.0 4.16e-01 88.9% 34.9%
3959685 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 58.0 5.99e-01 90.5% 95.4%
4033843 2004.1.1.313 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom 0.68 59.0 5.90e-01 100.0% 90.3%
3957998 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.68 61.0 5.99e-01 95.8% 97.6%
4935745 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.68 57.0 5.82e-01 88.4% 97.8%
5050668 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.67 56.0 5.75e-01 87.3% 98.4%
4308308 2004.1.1.771 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_lid_NAV1 0.67 61.0 4.90e-01 95.2% 69.3%
3166204 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.67 61.0 5.60e-01 95.8% 82.6%
3925713 2004.1.1.500 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_6 0.67 57.0 5.14e-01 88.4% 71.4%
3700673 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 55.0 5.77e-01 88.4% 95.9%
3717180 2004.1.1.93 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynein_heavy 0.66 54.0 5.60e-01 92.1% 92.0%
3689726 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.65 54.0 5.43e-01 86.8% 87.7%
3262245 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 59.0 4.92e-01 97.4% 79.7%
3922834 2004.1.1.180 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_6 0.64 55.0 5.38e-01 90.5% 94.0%
3348287 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 53.0 5.27e-01 88.9% 91.0%
4025220 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.63 53.0 4.26e-01 89.4% 90.2%
3675905 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.63 52.0 5.29e-01 90.5% 89.2%
5046175 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.62 54.0 5.23e-01 89.9% 96.1%
3708291 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 50.0 4.64e-01 85.7% 97.9%
4941655 2004.1.1.129 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zot 0.61 55.0 5.56e-01 95.8% 100.0%
4031427 2004.1.1.117 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 0.57 50.0 4.71e-01 93.7% 85.2%
4971131 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 52.0 3.80e-01 99.5% 52.5%
5053147 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 52.0 3.77e-01 99.5% 51.1%
3242404 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.54 43.0 4.26e-01 81.5% 89.7%
4543907 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.54 41.0 3.74e-01 81.0% 97.7%
4333640 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.54 46.0 3.36e-01 91.5% 72.1%
3950210 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 28.0 3.26e-01 87.8% 68.1%
3241953 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 42.0 4.08e-01 84.1% 97.2%
3960822 2004.1.1.197 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_3 0.52 42.0 3.32e-01 82.5% 73.4%
5053157 2004.5.1.0 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.51 46.0 4.11e-01 98.4% 77.5%
3959041 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 3.22e-01 82.5% 72.8%
4440430 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.51 39.0 3.55e-01 81.5% 94.3%
D7 medium residues 698-797
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.74 51.0 4.46e-01 71.0% 63.8%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.71 48.0 4.21e-01 70.0% 59.1%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.71 50.0 5.00e-01 72.0% 71.3%
5fglA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 52.0 4.12e-01 79.0% 92.5%
3himA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 49.0 3.94e-01 74.0% 88.9%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.68 48.0 4.76e-01 72.0% 71.8%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.68 48.0 4.63e-01 73.0% 66.1%
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 50.0 5.28e-01 79.0% 89.7%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 49.0 5.07e-01 77.0% 83.0%
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 47.0 4.00e-01 73.0% 53.8%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.66 46.0 4.84e-01 77.0% 81.8%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.65 45.0 4.51e-01 72.0% 99.0%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 43.0 4.57e-01 70.0% 79.1%
1hw1A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.64 44.0 3.88e-01 72.0% 69.5%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 45.0 3.97e-01 73.0% 61.4%
7cj3A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 50.0 3.63e-01 83.0% 37.6%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.63 44.0 4.07e-01 72.0% 85.6%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 48.0 3.94e-01 84.0% 58.9%
2okuA00 1.20.120.470 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain 0.61 44.0 4.16e-01 76.0% 85.2%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 41.0 4.35e-01 71.0% 93.1%
2eb1C00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.58 45.0 3.88e-01 85.0% 100.0%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.58 40.0 3.51e-01 71.0% 50.3%
1eq1A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.58 40.0 3.40e-01 71.0% 50.0%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.57 43.0 4.08e-01 79.0% 82.4%
4oo2A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 39.0 3.12e-01 71.0% 90.8%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 35.0 3.21e-01 72.0% 47.3%
1gpeA03 3.30.560.10 Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 0.55 39.0 2.88e-01 77.0% 68.5%
2d05A02 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.53 36.0 3.48e-01 80.0% 62.2%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 36.0 3.85e-01 70.0% 86.9%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.52 40.0 3.69e-01 80.0% 75.2%
3p5nA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.51 41.0 3.51e-01 88.0% 81.5%
3k9dA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 42.0 3.19e-01 92.0% 97.2%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.70e-01 87.0% 92.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1883334 2004.1.1.136 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF927 0.78 61.0 4.43e-01 84.0% 32.2%
2124272 191.1.1.35 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_35 0.73 52.0 5.08e-01 74.0% 69.7%
4257004 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.72 58.0 4.31e-01 86.0% 90.4%
3517388 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 57.0 4.61e-01 86.0% 46.7%
5066085 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.71 43.0 4.42e-01 70.0% 63.2%
3959862 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.71 51.0 4.79e-01 75.0% 62.5%
3952041 191.1.1.35 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_35 0.71 51.0 4.80e-01 75.0% 62.5%
3288623 191.1.1.35 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_35 0.69 50.0 4.68e-01 76.0% 60.8%
5018946 5079.1.1.1 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.68 51.0 4.19e-01 79.0% 60.7%
5019942 5079.1.1.1 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.67 49.0 4.01e-01 77.0% 52.6%
3289203 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.67 47.0 4.61e-01 73.0% 72.7%
4008776 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.67 51.0 3.98e-01 80.0% 93.8%
3699903 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.67 46.0 4.68e-01 72.0% 84.0%
3284524 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.67 48.0 4.60e-01 75.0% 67.0%
3951200 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.65 49.0 5.07e-01 85.0% 84.2%
3189791 601.19.1.18 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.65 52.0 3.94e-01 84.0% 74.3%
4814 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.64 50.0 4.86e-01 85.0% 75.2%
2576189 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.63 50.0 3.60e-01 96.0% 31.2%
3967043 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.62 50.0 5.10e-01 88.0% 96.8%
3270125 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.61 50.0 3.66e-01 88.0% 55.6%
3904595 611.2.1.0 alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) 0.61 42.0 4.06e-01 71.0% 86.1%
3913850 601.19.1.5 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PBC (DEPRECATED) 0.61 45.0 4.21e-01 78.0% 97.6%
4997312 3396.1.1.0 extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A 0.61 43.0 4.61e-01 74.0% 91.8%
3716509 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 39.0 4.02e-01 71.0% 68.4%
3290535 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.60 48.0 4.57e-01 87.0% 77.5%
3613581 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.60 46.0 3.11e-01 83.0% 54.7%
3601064 524.1.1.0 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.58 49.0 3.84e-01 91.0% 100.0%
5010682 3352.1.1.1 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 0.58 44.0 2.95e-01 82.0% 85.9%
4088719 3579.1.1.13 extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › PhaG_MnhG_YufB 0.57 44.0 4.26e-01 82.0% 80.5%
5055626 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.57 42.0 3.76e-01 80.0% 99.3%
3979691 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.56 46.0 3.64e-01 92.0% 82.3%
3386014 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 46.0 3.26e-01 89.0% 57.0%
3591231 193.1.1.0 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.54 40.0 3.16e-01 76.0% 82.0%
3618142 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.51 35.0 3.60e-01 70.0% 82.1%
4826576 150.1.1.5 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 0.51 38.0 4.06e-01 78.0% 100.0%
4436370 5073.1.2.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.51 37.0 2.80e-01 76.0% 41.6%
4358198 172.2.1.1 alpha complex topology › Citrate synthase-like › Urease accessory protein ureF › Urease accessory protein ureF › UreF 0.50 41.0 3.11e-01 86.0% 74.6%