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NC_025416.1__YP_009098126.1__OZ71_gp196__00196

Bact-Vir

NC_025416.1__YP_009098126.1__OZ71_gp196__00196

Identity

Accession:
NC_025416 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-61
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.79 69.0 5.68e-01 100.0% 59.6%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.77 56.0 5.28e-01 78.4% 75.8%
6u7iB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.76 62.0 5.18e-01 100.0% 52.2%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.76 64.0 5.65e-01 100.0% 64.9%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.75 63.0 4.75e-01 100.0% 63.2%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 63.0 4.93e-01 100.0% 73.9%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 63.0 5.23e-01 100.0% 53.7%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 42.0 2.65e-01 100.0% 10.8%
4nzjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.73 65.0 5.45e-01 100.0% 85.1%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 62.0 5.25e-01 100.0% 63.3%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 63.0 5.23e-01 100.0% 67.4%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.72 61.0 5.03e-01 100.0% 82.8%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 60.0 4.94e-01 100.0% 54.2%
1cidA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 55.0 5.02e-01 96.1% 64.8%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 59.0 5.10e-01 100.0% 64.7%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 57.0 4.77e-01 100.0% 52.5%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.88e-01 100.0% 57.1%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.64e-01 100.0% 63.1%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 57.0 4.67e-01 100.0% 53.4%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 59.0 5.56e-01 100.0% 93.5%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 58.0 5.52e-01 100.0% 95.2%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.66 39.0 3.51e-01 100.0% 40.8%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 56.0 4.14e-01 100.0% 47.8%
3e38A02 2.60.40.3090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 53.0 4.75e-01 100.0% 69.6%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.75e-01 100.0% 97.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 37.0 3.20e-01 98.0% 35.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 52.0 4.67e-01 100.0% 86.1%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 4.27e-01 100.0% 67.3%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 50.0 4.40e-01 100.0% 79.5%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.62 49.0 4.52e-01 100.0% 66.2%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.62 48.0 4.05e-01 100.0% 52.7%
4uozA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 52.0 4.97e-01 98.0% 95.2%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.28e-01 100.0% 61.5%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 53.0 4.62e-01 100.0% 86.3%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 53.0 4.48e-01 100.0% 83.0%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 44.0 3.52e-01 76.5% 49.0%
5e9aB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 49.0 4.73e-01 100.0% 93.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 35.0 3.26e-01 96.1% 42.4%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 49.0 4.01e-01 100.0% 76.9%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 42.0 3.39e-01 76.5% 44.7%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 48.0 4.07e-01 100.0% 79.8%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.50e-01 92.2% 70.7%
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 41.0 4.12e-01 96.1% 78.0%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 42.0 3.40e-01 76.5% 47.4%
3f79E00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 45.0 3.06e-01 98.0% 38.1%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 3.76e-01 100.0% 55.7%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 46.0 4.20e-01 96.1% 81.8%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.53 37.0 2.81e-01 78.4% 66.7%
4aeeA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 42.0 4.00e-01 100.0% 77.6%
5aedA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 43.0 3.67e-01 100.0% 67.4%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 41.0 3.29e-01 98.0% 77.6%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 3.16e-01 98.0% 51.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037565 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.88 79.0 7.05e-01 98.0% 77.1%
5009956 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.84 75.0 6.12e-01 100.0% 55.6%
5012229 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.83 75.0 6.38e-01 100.0% 72.5%
5016529 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.83 74.0 6.24e-01 100.0% 68.2%
4018218 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.83 73.0 6.06e-01 100.0% 65.6%
4928963 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.80 70.0 5.63e-01 100.0% 67.0%
185144 11.1.1.146 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 0.79 69.0 5.67e-01 100.0% 59.6%
5022706 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 67.0 5.66e-01 100.0% 62.2%
4963954 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.77 66.0 5.30e-01 100.0% 71.4%
3756132 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.77 65.0 5.45e-01 100.0% 62.1%
3928940 241.6.1.1 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.76 45.0 3.08e-01 100.0% 17.6%
3790335 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 64.0 5.36e-01 100.0% 53.7%
143706 11.1.1.146 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 0.76 64.0 5.45e-01 100.0% 58.1%
4100839 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.75 45.0 4.61e-01 100.0% 62.0%
5058098 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 65.0 5.38e-01 100.0% 65.3%
4929232 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 64.0 5.17e-01 100.0% 56.2%
3590128 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.74 63.0 5.33e-01 100.0% 57.8%
4966253 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 63.0 5.23e-01 100.0% 60.0%
3331785 11.1.1.919 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7356 0.72 62.0 5.12e-01 100.0% 55.8%
5033327 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 60.0 5.17e-01 98.0% 61.2%
3761389 10.32.1.20 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA 0.71 55.0 4.14e-01 86.3% 97.7%
3772049 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.71 59.0 3.84e-01 98.0% 23.7%
3748648 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.71 60.0 4.78e-01 100.0% 53.6%
4004517 11.1.1.1138 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29285 0.70 59.0 5.10e-01 100.0% 65.9%
3913084 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.70 58.0 4.98e-01 100.0% 58.9%
3284932 11.1.1.399 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PLipase_C_C 0.69 58.0 4.85e-01 100.0% 56.8%
5037264 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 56.0 4.97e-01 96.1% 85.0%
5038443 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 40.0 3.56e-01 100.0% 40.0%
3868328 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.68 56.0 4.60e-01 98.0% 57.0%
4364087 3844.1.1.1 a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.68 42.0 3.20e-01 100.0% 27.8%
3849127 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 51.0 5.22e-01 88.2% 86.0%
2527942 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 57.0 5.10e-01 100.0% 85.5%
5014975 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 55.0 4.93e-01 100.0% 65.0%
5003245 243.8.1.0 a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.63 38.0 3.48e-01 100.0% 42.9%
3492201 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.62 36.0 3.24e-01 98.0% 37.3%
3557603 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 4.29e-01 100.0% 64.7%
4066147 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.60 45.0 2.70e-01 100.0% 12.3%
3171622 11.1.1.643 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 0.60 48.0 4.07e-01 100.0% 64.0%
5079230 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 51.0 4.10e-01 100.0% 89.5%
3511109 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 48.0 4.20e-01 100.0% 97.6%
1980 12.1.1.11 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › MGTA_C 0.58 41.0 4.16e-01 96.1% 78.0%
3268048 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 47.0 4.54e-01 100.0% 88.3%
4964119 300.1.1.18 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.56 43.0 3.05e-01 84.3% 89.4%
4141444 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.55 42.0 2.83e-01 88.2% 85.2%
3238362 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.70e-01 96.1% 35.5%
4132407 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.53 41.0 2.80e-01 84.3% 95.0%
3607300 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 45.0 4.24e-01 94.1% 96.7%
4529129 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.52 44.0 3.00e-01 100.0% 34.3%
None 0.52 41.0 3.66e-01 100.0% 82.4%
5013654 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.52 46.0 2.76e-01 98.0% 20.3%
3929846 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.61e-01 96.1% 35.4%
4889098 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 44.0 3.42e-01 98.0% 57.8%
4088247 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.51 42.0 2.55e-01 100.0% 31.8%
3479225 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.51 39.0 3.42e-01 100.0% 83.0%