←Back to structures

NC_025423.1__YP_009099262.1__OZ73_gp218__00218

Bact-Vir

NC_025423.1__YP_009099262.1__OZ73_gp218__00218

Identity

Accession:
NC_025423 ↗
Kingdom:
phage

Quality

67.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Siminovitchvirus› Bacillus_phage_CP-51

TaxID: 1391188

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-155
PDB
Domain cluster: rep: NC_024788.1__YP_009055966.1__LD11_gp201__00201__D4-94
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04542.21 best Sigma70_r2 41.3 1.50e-10 66.1% 93.0%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.86 56.0 6.83e-01 71.1% 100.0%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.85 58.0 6.90e-01 76.9% 100.0%
1sigA00 1.10.601.10 Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor 0.84 69.0 4.92e-01 84.3% 99.7%
6ldiF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 6.96e-01 90.9% 97.9%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.70 60.0 5.25e-01 94.2% 97.3%
5yixA00 1.10.601.10 Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor 0.64 52.0 3.84e-01 88.4% 100.0%
3tdoA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.56 40.0 3.19e-01 73.6% 76.3%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.56 45.0 4.21e-01 86.0% 87.9%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.55 45.0 4.07e-01 91.7% 71.3%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 37.0 4.12e-01 95.0% 97.7%
2qibB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 44.0 3.71e-01 91.7% 61.1%
4ppuA00 1.10.590.10 Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic 0.53 45.0 3.63e-01 95.0% 51.0%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 38.0 2.80e-01 76.9% 79.8%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 36.0 3.20e-01 74.4% 74.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3067828 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.90 56.0 7.01e-01 76.0% 97.4%
2552938 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.89 67.0 7.58e-01 87.6% 97.9%
3278088 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.88 68.0 7.12e-01 85.1% 86.4%
3971939 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.88 59.0 7.00e-01 72.7% 96.5%
4524644 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.87 71.0 5.79e-01 95.0% 49.8%
4258677 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.86 74.0 5.87e-01 100.0% 48.4%
5030154 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.86 74.0 7.51e-01 90.9% 98.3%
4349095 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.85 68.0 7.02e-01 90.1% 87.0%
4274766 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.85 71.0 7.59e-01 91.7% 99.0%
None — 0.84 74.0 5.91e-01 100.0% 50.9%
4147641 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.83 62.0 6.54e-01 87.6% 85.5%
3972284 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.83 67.0 6.90e-01 90.9% 88.7%
4513974 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.82 72.0 7.24e-01 95.0% 91.7%
4624390 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.82 67.0 6.94e-01 91.7% 89.6%
4053923 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.82 68.0 7.27e-01 91.7% 99.0%
None — 0.82 74.0 6.51e-01 94.2% 86.7%
61904 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.82 57.0 6.67e-01 78.5% 100.0%
4484001 142.1.1.4 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2,Sigma70_ner 0.81 69.0 4.84e-01 88.4% 100.0%
4225227 142.1.1.2 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2,Sigma70_ner 0.81 74.0 5.07e-01 95.0% 100.0%
4272325 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 67.0 5.47e-01 94.2% 50.0%
3963570 142.1.1.2 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2,Sigma70_ner 0.81 74.0 5.12e-01 96.7% 99.4%
3978386 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 73.0 5.07e-01 95.0% 100.0%
3339567 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.80 74.0 6.33e-01 96.7% 87.2%
4319899 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.80 73.0 5.32e-01 95.0% 99.0%
3838866 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.80 73.0 4.95e-01 95.0% 92.0%
3090120 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.80 68.0 6.94e-01 98.3% 92.4%
4322147 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 75.0 4.82e-01 99.2% 75.5%
3664504 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.79 70.0 6.32e-01 92.6% 90.5%
3284461 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 71.0 5.40e-01 93.4% 61.2%
140810 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.79 70.0 6.03e-01 93.4% 96.1%
4238054 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 71.0 5.43e-01 93.4% 60.8%
None — 0.79 71.0 5.42e-01 93.4% 60.8%
3284984 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 72.0 5.47e-01 95.9% 61.4%
4218058 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.79 73.0 5.16e-01 97.5% 99.7%
4452096 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.78 71.0 5.94e-01 95.9% 98.5%
4631806 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.78 73.0 6.04e-01 99.2% 83.0%
4066835 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.78 65.0 6.42e-01 94.2% 84.0%
None — 0.78 68.0 6.30e-01 92.6% 96.0%
4269761 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.77 70.0 5.88e-01 95.0% 98.9%
3360961 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.77 72.0 6.20e-01 97.5% 84.0%
3428775 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 72.0 5.15e-01 98.3% 62.5%
3676572 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.77 68.0 5.89e-01 92.6% 85.7%
4056597 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 72.0 5.15e-01 99.2% 59.9%
3828850 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.77 67.0 6.14e-01 91.7% 92.0%
3299379 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.76 70.0 6.42e-01 97.5% 98.0%
4570076 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.76 70.0 5.20e-01 98.3% 57.9%
3590541 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.75 56.0 4.84e-01 90.9% 51.7%
4233279 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 66.0 5.11e-01 92.6% 58.7%
None — 0.74 70.0 4.86e-01 99.2% 46.0%
4663875 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.74 64.0 5.00e-01 90.9% 60.0%
4026959 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.69 63.0 4.60e-01 100.0% 63.9%
4106336 142.1.1.4 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2,Sigma70_ner 0.68 58.0 4.26e-01 92.6% 100.0%
3385849 1075.5.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ 0.67 48.0 4.00e-01 74.4% 88.6%
4108773 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.64 57.0 4.18e-01 97.5% 99.1%
5035554 3896.1.1.2 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 0.58 47.0 4.00e-01 90.1% 86.7%
4988985 1076.1.1.4 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease 0.53 44.0 3.95e-01 91.7% 90.5%
3502904 611.8.1.0 ↗ alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 0.52 39.0 3.71e-01 78.5% 86.9%
3669852 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.50 44.0 3.56e-01 95.9% 87.2%
4506271 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.50 39.0 3.70e-01 82.6% 80.7%
5069603 601.18.1.30 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › Cytochrom_C_asm 0.50 37.0 3.70e-01 77.7% 86.4%
D2 high residues 186-265
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 51.0 6.01e-01 72.5% 92.7%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 6.52e-01 81.2% 100.0%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 6.21e-01 85.0% 92.2%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 6.43e-01 87.5% 98.4%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 5.52e-01 82.5% 77.8%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 5.31e-01 75.0% 66.3%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 61.0 5.49e-01 95.0% 62.9%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.34e-01 82.5% 71.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.84e-01 91.3% 80.0%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 58.0 5.54e-01 90.0% 71.3%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 4.98e-01 71.2% 65.2%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 5.43e-01 76.2% 77.6%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.99e-01 81.2% 98.4%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.64e-01 71.2% 74.0%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.73 50.0 4.51e-01 78.8% 53.3%
1q1hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.28e-01 80.0% 72.9%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 5.64e-01 77.5% 89.4%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.72 59.0 4.36e-01 88.7% 85.4%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.16e-01 76.2% 74.4%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.72 54.0 3.95e-01 80.0% 96.7%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 4.78e-01 82.5% 65.5%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.18e-01 75.0% 51.1%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 53.0 5.00e-01 78.8% 72.3%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 5.08e-01 78.8% 78.9%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 53.0 3.87e-01 82.5% 59.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 51.0 4.67e-01 78.8% 68.9%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.83e-01 77.5% 73.2%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 56.0 4.12e-01 92.5% 46.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 3.93e-01 75.0% 51.8%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 52.0 3.94e-01 83.7% 81.1%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.85e-01 83.7% 85.7%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.24e-01 72.5% 59.6%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 49.0 4.51e-01 80.0% 65.1%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 56.0 4.91e-01 96.2% 65.0%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.78e-01 72.5% 92.8%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 3.70e-01 71.2% 45.5%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.47e-01 96.2% 75.4%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.45e-01 97.5% 78.6%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.30e-01 95.0% 77.1%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.01e-01 90.0% 83.1%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.18e-01 100.0% 76.1%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.02e-01 93.8% 82.4%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 38.0 4.10e-01 73.8% 88.1%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.05e-01 100.0% 76.9%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 38.0 3.78e-01 80.0% 77.0%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940480 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 55.0 6.56e-01 71.2% 98.2%
None — 0.84 60.0 4.16e-01 90.0% 24.5%
4238054 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.83 60.0 4.14e-01 90.0% 24.5%
4926894 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.83 52.0 5.97e-01 70.0% 85.0%
3980765 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 4.73e-01 91.3% 40.0%
4253265 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.78 61.0 4.71e-01 91.3% 40.0%
3589414 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.78 53.0 5.40e-01 75.0% 71.2%
136408 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.78 55.0 5.33e-01 75.0% 66.3%
3986364 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.77 55.0 5.29e-01 76.2% 65.6%
3578154 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 5.82e-01 87.5% 74.4%
3945715 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.77 56.0 5.79e-01 76.2% 82.7%
3284984 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 58.0 4.01e-01 88.7% 25.2%
3998880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 59.0 5.59e-01 82.5% 75.8%
4663875 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.76 58.0 4.06e-01 87.5% 26.7%
4982701 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.76 52.0 5.16e-01 71.2% 68.2%
5027661 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 63.0 5.48e-01 87.5% 86.1%
5029842 101.1.2.645 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.76 54.0 4.95e-01 75.0% 57.1%
4132207 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.76 52.0 4.21e-01 71.2% 49.7%
4674817 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.75 61.0 4.71e-01 96.2% 40.0%
3284461 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 57.0 3.97e-01 87.5% 25.6%
5034407 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.75 57.0 6.08e-01 81.2% 94.3%
3424337 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.75 52.0 5.25e-01 72.5% 88.7%
5011311 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 51.0 5.29e-01 73.8% 76.0%
5019754 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 61.0 5.25e-01 87.5% 80.0%
3972282 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 57.0 5.76e-01 87.5% 83.5%
4377139 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.74 52.0 5.25e-01 76.2% 73.8%
5056718 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 63.0 5.48e-01 91.3% 84.7%
3586840 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.74 51.0 5.06e-01 76.2% 68.2%
4990436 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.73 50.0 5.14e-01 70.0% 76.0%
3941471 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.73 50.0 5.26e-01 73.8% 80.0%
3282102 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.73 51.0 4.12e-01 72.5% 50.7%
4585396 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 59.0 4.73e-01 93.8% 44.4%
4570076 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 61.0 4.15e-01 96.2% 26.1%
4056597 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 61.0 4.03e-01 93.8% 23.2%
3984771 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.73 52.0 4.47e-01 77.5% 48.0%
5002248 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 59.0 5.13e-01 87.5% 80.8%
3946141 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.72 52.0 5.24e-01 77.5% 75.0%
4947168 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.72 52.0 4.98e-01 75.0% 73.3%
3979850 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.72 51.0 5.07e-01 78.8% 70.6%
4034188 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.72 51.0 5.24e-01 73.8% 80.0%
3194347 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.71 59.0 4.76e-01 90.0% 49.7%
3721781 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.71 64.0 5.05e-01 100.0% 52.1%
4612394 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.71 52.0 5.07e-01 77.5% 77.5%
4929479 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.71 51.0 4.92e-01 75.0% 73.3%
3979886 3759.1.1.2 ↗ alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Phage_antiter_Q 0.71 63.0 5.10e-01 100.0% 94.8%
4934188 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 5.36e-01 88.7% 73.0%
5073990 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.71 57.0 5.92e-01 87.5% 93.3%
5037673 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.70 52.0 4.66e-01 77.5% 61.8%
4945282 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.70 53.0 4.71e-01 80.0% 60.5%
5042406 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.70 50.0 4.72e-01 73.8% 70.5%
4947863 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.70 53.0 5.14e-01 80.0% 76.7%
3965373 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.70 51.0 5.36e-01 76.2% 87.1%
3788384 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 50.0 4.53e-01 75.0% 79.8%
5023607 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.70 53.0 4.33e-01 80.0% 47.6%
5025139 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.70 52.0 4.92e-01 78.8% 71.6%
5076381 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.70 52.0 4.83e-01 78.8% 68.0%
4944102 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.69 53.0 5.08e-01 80.0% 76.7%
4996071 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.69 52.0 5.03e-01 80.0% 75.6%
4932456 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.04e-01 83.7% 90.0%
3989750 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.69 49.0 4.39e-01 75.0% 65.8%
3941971 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.69 51.0 4.76e-01 78.8% 63.0%
4961655 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.69 57.0 5.41e-01 90.0% 82.1%
4999627 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.69 51.0 4.28e-01 78.8% 50.4%
4552002 3728.1.1.1 ↗ alpha superhelices › Surface cell antigen Sca2 helical repeats › Surface cell antigen Sca2 helical repeats › Surface cell antigen Sca2 helical repeats › Sca2 0.69 48.0 3.22e-01 80.0% 19.7%
4962267 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.68 48.0 4.69e-01 73.8% 73.3%
5025138 101.1.10.80 ↗ alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF 0.68 51.0 3.83e-01 80.0% 34.5%
4943136 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.68 51.0 4.95e-01 80.0% 76.7%
3787293 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.68 52.0 4.47e-01 81.2% 55.2%
4994316 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.68 50.0 4.18e-01 78.8% 48.6%
2555 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.68 48.0 4.81e-01 77.5% 72.3%
5025027 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.68 51.0 4.40e-01 80.0% 55.2%
4942375 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.67 51.0 3.82e-01 80.0% 35.6%
4927466 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.67 50.0 4.83e-01 80.0% 76.7%
3668668 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.66 55.0 4.70e-01 88.7% 57.6%
3890040 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.66 51.0 4.23e-01 82.5% 51.4%
3262460 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.66 56.0 3.72e-01 98.8% 57.8%
4956629 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.66 51.0 4.60e-01 83.7% 65.5%
5037039 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.66 51.0 4.40e-01 83.7% 56.8%
4086835 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.65 48.0 4.87e-01 80.0% 77.5%
4030708 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.65 55.0 3.19e-01 91.3% 83.8%
5023608 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.65 51.0 4.34e-01 85.0% 81.5%
4956628 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.65 50.0 4.21e-01 85.0% 52.1%
4969273 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 54.0 5.09e-01 93.8% 78.6%
3588238 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.60 44.0 3.33e-01 80.0% 98.6%
3968957 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.57 43.0 3.20e-01 81.2% 97.1%
347560 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 43.0 3.58e-01 90.0% 74.8%