←Back to structures

NC_025424.1__YP_009099295.1__Waukesha92_30__00030

Bact-Vir

NC_025424.1__YP_009099295.1__Waukesha92_30__00030

Identity

Accession:
NC_025424 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Waukeshavirus› Bacillus_phage_Waukesha92

TaxID: 1510440

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-95_206-233
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 48.0 5.01e-01 78.3% 97.4%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 39.0 2.57e-01 75.9% 14.9%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 3.01e-01 78.3% 45.8%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 40.0 2.62e-01 77.1% 15.0%
3r9pB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 42.0 3.37e-01 75.9% 70.1%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.58 41.0 3.57e-01 74.7% 63.6%
1kcfB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 41.0 3.03e-01 75.9% 51.3%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.77e-01 79.5% 29.7%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.79e-01 95.2% 78.3%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.53 43.0 3.86e-01 90.4% 75.4%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.88e-01 96.4% 91.1%
1u4cB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 36.0 2.47e-01 71.1% 27.9%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.60e-01 85.5% 96.3%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 4.43e-01 95.2% 98.8%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 36.0 3.57e-01 72.3% 83.9%
2g7uC02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 37.0 2.97e-01 77.1% 98.9%
1efdN02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 36.0 2.98e-01 77.1% 55.0%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.82e-01 89.2% 75.5%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.44e-01 78.3% 100.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248068 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.70 57.0 5.84e-01 100.0% 92.5%
3927366 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.65 46.0 3.85e-01 75.9% 84.0%
3929202 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.61 46.0 4.30e-01 80.7% 86.7%
4485741 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 37.0 2.21e-01 73.5% 7.3%
4036149 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.61 46.0 3.82e-01 100.0% 46.2%
2153195 2484.5.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.60 48.0 4.35e-01 86.7% 65.2%
3599435 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.58 41.0 2.66e-01 73.5% 24.4%
4275468 223.1.1.95 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › NtrY_N 0.58 40.0 3.16e-01 71.1% 76.5%
3251045 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.56 48.0 3.92e-01 94.0% 75.3%
1871497 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.56 48.0 4.28e-01 95.2% 89.1%
3586554 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 4.36e-01 96.4% 90.9%
3188055 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 41.0 2.69e-01 79.5% 57.0%
3623154 5.1.4.436 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.56 40.0 2.32e-01 75.9% 11.8%
4213219 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.55 42.0 2.43e-01 80.7% 29.8%
4054903 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 41.0 2.40e-01 79.5% 30.1%
3829068 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 40.0 2.90e-01 75.9% 41.7%
3254993 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 46.0 3.35e-01 100.0% 73.4%
4927614 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 4.26e-01 95.2% 83.6%
3898197 220.1.1.192 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.54 46.0 3.94e-01 97.6% 79.3%
3928216 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.06e-01 100.0% 73.8%
3931129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 41.0 2.85e-01 83.1% 33.1%
4011588 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.53 38.0 3.99e-01 79.5% 82.7%
3645259 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.53 45.0 4.14e-01 95.2% 82.7%
3240084 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.53 37.0 2.52e-01 73.5% 20.3%
4195924 5.1.4.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.53 39.0 2.51e-01 78.3% 23.7%
3451665 220.1.1.206 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_AIR9 0.53 44.0 3.89e-01 94.0% 80.8%
3415375 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 42.0 2.84e-01 88.0% 91.2%
3485410 5.1.4.30 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL 0.53 39.0 2.51e-01 79.5% 70.2%
3993098 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.52 46.0 2.77e-01 97.6% 81.4%
3845291 220.1.1.119 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.52 45.0 3.34e-01 100.0% 82.6%
3389668 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.51 43.0 4.11e-01 95.2% 82.0%
3579987 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.51 45.0 4.11e-01 100.0% 90.9%
None — 0.51 37.0 2.24e-01 80.7% 30.0%
3390473 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 4.00e-01 96.4% 82.9%
3784673 220.1.1.190 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 0.50 43.0 3.45e-01 95.2% 74.5%
4144356 5.1.4.248 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR55 0.50 39.0 2.64e-01 84.3% 82.7%
D2 high residues 102-200
PDB
Domain cluster: rep: KT337358.1__ALA46918.1__phiARI0468-4_33__00033__D1-97