Back to structures

NC_025441.1__YP_009101012.1__PI34_gp11__00011

Bact-Vir

NC_025441.1__YP_009101012.1__PI34_gp11__00011

Identity

Accession:
NC_025441 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-89
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 4.86e-01 100.0% 46.4%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.05e-01 100.0% 52.7%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.06e-01 100.0% 54.9%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.08e-01 100.0% 57.2%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 4.90e-01 100.0% 55.0%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 4.93e-01 100.0% 56.9%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 4.88e-01 100.0% 54.9%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 4.95e-01 100.0% 57.4%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 5.04e-01 100.0% 61.9%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 63.0 5.82e-01 100.0% 81.6%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 60.0 5.71e-01 100.0% 88.5%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.88e-01 88.2% 79.3%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 58.0 5.70e-01 98.8% 96.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 58.0 5.40e-01 100.0% 80.2%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.44e-01 89.4% 65.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 56.0 5.19e-01 100.0% 78.1%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.77e-01 100.0% 65.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 57.0 5.37e-01 100.0% 82.5%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.85e-01 100.0% 70.5%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.98e-01 95.3% 81.2%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.93e-01 98.8% 79.2%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 54.0 4.61e-01 100.0% 65.7%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.56e-01 98.8% 75.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.29e-01 91.8% 63.3%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 4.60e-01 100.0% 80.0%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.71e-01 87.1% 89.7%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.66e-01 96.5% 88.2%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.96e-01 98.8% 96.4%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.56 53.0 3.56e-01 100.0% 56.6%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 50.0 4.56e-01 98.8% 75.7%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 40.0 3.10e-01 74.1% 44.3%
1i8dC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 43.0 4.28e-01 83.5% 100.0%
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 36.0 3.04e-01 90.6% 39.0%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 39.0 3.63e-01 75.3% 87.0%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.57e-01 76.5% 94.6%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 4.32e-01 100.0% 81.1%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 46.0 4.44e-01 100.0% 96.8%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070232 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 6.22e-01 100.0% 84.7%
4476647 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.70 62.0 5.13e-01 100.0% 57.1%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 5.23e-01 100.0% 60.8%
5062630 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 6.07e-01 96.5% 95.0%
4970751 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.76e-01 95.3% 94.7%
4979815 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.68 58.0 5.74e-01 97.6% 86.7%
4944702 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 62.0 5.10e-01 100.0% 59.3%
2036621 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 63.0 5.82e-01 100.0% 81.6%
5071948 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.61e-01 94.1% 87.1%
3602589 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.67 58.0 5.50e-01 100.0% 79.0%
4999532 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 62.0 4.42e-01 100.0% 37.4%
3286725 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 62.0 4.70e-01 100.0% 48.1%
5061948 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 63.0 5.12e-01 100.0% 61.8%
5046461 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 62.0 4.60e-01 100.0% 44.0%
3278037 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 62.0 4.62e-01 100.0% 45.6%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 61.0 4.63e-01 100.0% 48.1%
4978412 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 62.0 4.73e-01 100.0% 50.3%
5065027 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 61.0 5.01e-01 100.0% 60.0%
3280466 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 61.0 4.58e-01 100.0% 46.8%
3286277 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 61.0 4.64e-01 100.0% 50.0%
4978419 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 52.0 5.56e-01 95.3% 96.0%
4959927 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 60.0 4.70e-01 100.0% 51.8%
4943526 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.65 59.0 4.81e-01 100.0% 85.1%
5060792 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 59.0 5.19e-01 100.0% 71.8%
3281879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 60.0 4.58e-01 100.0% 49.4%
5047402 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 60.0 5.46e-01 100.0% 80.9%
2391543 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 59.0 4.43e-01 98.8% 44.2%
4978090 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 60.0 4.36e-01 100.0% 40.9%
3285723 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 59.0 4.59e-01 100.0% 51.4%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.82e-01 97.6% 100.0%
5072200 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 59.0 5.48e-01 100.0% 80.0%
4984935 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 3.77e-01 91.8% 33.5%
4999286 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 60.0 4.59e-01 100.0% 48.9%
5050259 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 60.0 4.53e-01 100.0% 47.0%
4935606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.51e-01 91.8% 95.0%
4998735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 58.0 4.92e-01 98.8% 74.8%
5065235 101.1.2.738 alpha arrays › HTH › HTH › winged helix domain › Vir_act_alpha_C 0.64 59.0 4.46e-01 98.8% 46.5%
4981961 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.64 57.0 4.60e-01 97.6% 70.6%
5077121 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 57.0 5.53e-01 96.5% 86.3%
4944813 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.63 57.0 4.38e-01 97.6% 67.0%
141918 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.63 58.0 4.52e-01 98.8% 50.6%
4943285 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 58.0 4.88e-01 98.8% 73.3%
4934055 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 54.0 5.61e-01 91.8% 97.5%
5001098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 57.0 5.61e-01 98.8% 92.2%
5048181 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.63 57.0 4.44e-01 97.6% 68.2%
3587894 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.63 58.0 4.49e-01 100.0% 49.7%
5016171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 57.0 4.60e-01 100.0% 78.1%
4960288 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 57.0 4.48e-01 100.0% 67.4%
5064508 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.62 57.0 5.38e-01 97.6% 89.0%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 57.0 5.37e-01 100.0% 82.5%
3587826 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 57.0 5.22e-01 100.0% 80.6%
4625648 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 56.0 5.15e-01 100.0% 79.8%
4938741 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 55.0 4.63e-01 98.8% 60.7%
3977793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 5.03e-01 97.6% 84.0%
3515049 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.60 54.0 4.54e-01 98.8% 86.4%
3254841 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.59 53.0 4.97e-01 98.8% 90.5%
3997528 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.59 53.0 4.42e-01 98.8% 90.3%
3455640 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 50.0 4.92e-01 94.1% 98.9%
5042462 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 46.0 3.65e-01 88.2% 42.4%
5035395 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 46.0 3.64e-01 88.2% 41.8%
5010795 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.79e-01 95.3% 80.0%
3767789 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.58 52.0 4.34e-01 98.8% 84.1%
3628572 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.58 52.0 4.57e-01 98.8% 80.8%
3940545 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.58 51.0 4.37e-01 98.8% 89.3%
4949880 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.86e-01 100.0% 85.3%
2966897 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.58 51.0 4.46e-01 98.8% 86.0%
3282515 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 52.0 4.10e-01 100.0% 92.6%
3645708 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 51.0 4.59e-01 98.8% 79.1%
3666424 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 4.50e-01 98.8% 72.5%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 49.0 4.55e-01 98.8% 75.5%
3726854 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.33e-01 94.1% 75.0%
3964741 101.1.2.368 alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.56 48.0 4.65e-01 100.0% 84.0%
3550228 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.24e-01 97.6% 70.8%
4975513 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 49.0 4.50e-01 100.0% 90.9%
5055466 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 49.0 4.42e-01 100.0% 91.3%
5081950 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 48.0 4.35e-01 100.0% 82.6%
5036311 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 47.0 4.51e-01 97.6% 92.0%
4957834 101.1.2.920 alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C 0.53 45.0 4.05e-01 95.3% 67.5%
3948669 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.52 34.0 3.16e-01 95.3% 50.4%