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NC_025445.1__YP_009101361.1__PI28_gp12__00012

Bact-Vir

NC_025445.1__YP_009101361.1__PI28_gp12__00012

Identity

Accession:
NC_025445 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Bonnellvirus› Escherichia_phage_J8-65

TaxID: 1536597

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-77
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.42e-01 100.0% 87.1%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 53.0 3.75e-01 86.8% 28.5%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 52.0 3.99e-01 85.3% 88.9%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 43.0 4.52e-01 79.4% 76.7%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 49.0 3.43e-01 80.9% 50.7%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 51.0 3.33e-01 85.3% 41.4%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 56.0 4.34e-01 100.0% 66.5%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 52.0 3.37e-01 91.2% 37.5%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 55.0 4.36e-01 100.0% 59.7%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 46.0 3.07e-01 77.9% 32.5%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 43.0 4.44e-01 85.3% 76.2%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.63e-01 75.0% 81.2%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 50.0 3.28e-01 85.3% 44.6%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.63 45.0 3.74e-01 77.9% 72.8%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.62 49.0 4.54e-01 88.2% 81.3%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.01e-01 88.2% 86.7%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.61 46.0 3.91e-01 79.4% 75.2%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 44.0 2.73e-01 77.9% 36.8%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.60 44.0 3.46e-01 79.4% 100.0%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.68e-01 85.3% 43.9%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 4.33e-01 88.2% 96.7%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 45.0 3.61e-01 85.3% 79.6%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 48.0 3.82e-01 94.1% 74.2%
7usrA01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.46e-01 79.4% 96.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.07e-01 100.0% 57.4%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.58 50.0 3.76e-01 95.6% 70.5%
3k5rA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.58 43.0 3.63e-01 79.4% 75.2%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.58 47.0 4.50e-01 92.6% 78.0%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 44.0 3.78e-01 85.3% 83.9%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 44.0 3.00e-01 85.3% 36.5%
5t4mB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 42.0 3.55e-01 77.9% 66.4%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 43.0 3.49e-01 85.3% 69.6%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.57 42.0 4.03e-01 80.9% 69.9%
1p1jA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 42.0 3.55e-01 79.4% 89.6%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.17e-01 82.4% 79.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 4.46e-01 91.2% 98.7%
1b9lA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.56 42.0 3.56e-01 82.4% 88.2%
5vh2D01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.55 41.0 3.58e-01 77.9% 69.9%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 4.12e-01 95.6% 67.0%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 3.87e-01 85.3% 91.3%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.52e-01 80.9% 94.3%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.54 36.0 3.78e-01 85.3% 81.4%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.35e-01 77.9% 92.8%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 2.92e-01 97.1% 66.3%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 40.0 3.79e-01 85.3% 89.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 37.0 3.20e-01 79.4% 76.4%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.52 39.0 3.38e-01 85.3% 85.7%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 43.0 3.36e-01 94.1% 56.8%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 38.0 3.36e-01 80.9% 73.3%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 40.0 2.88e-01 85.3% 36.2%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.34e-01 100.0% 43.0%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 3.52e-01 85.3% 93.8%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 2.98e-01 77.9% 88.1%
1f0lA03 2.60.40.700 Mainly Beta › Sandwich › Immunoglobulin-like › Diphtheria toxin, receptor-binding domain 0.50 42.0 3.33e-01 97.1% 94.2%
1hxmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.01e-01 75.0% 73.6%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 40.0 2.73e-01 91.2% 87.8%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.51e-01 83.8% 85.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3225640 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.74 61.0 5.02e-01 91.2% 65.6%
3458064 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.73 50.0 5.62e-01 76.5% 92.5%
3496292 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 53.0 5.83e-01 89.7% 96.4%
3931055 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.71 58.0 5.67e-01 100.0% 82.7%
3396774 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.70 58.0 4.95e-01 91.2% 87.3%
4003463 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.70 57.0 4.65e-01 89.7% 76.0%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.69 53.0 4.53e-01 100.0% 50.9%
3621723 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.69 56.0 3.83e-01 91.2% 38.4%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.52e-01 100.0% 83.8%
3297966 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.67 60.0 4.96e-01 100.0% 75.8%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.29e-01 100.0% 85.7%
3482706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.36e-01 100.0% 51.8%
3953766 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.66 52.0 3.77e-01 85.3% 73.5%
3551896 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.65 48.0 4.77e-01 77.9% 84.3%
3550168 4.8.1.27 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.64 57.0 5.17e-01 98.5% 93.3%
3894481 277.1.1.5 ↗ a+b two layers › PX domain › PX domain › PX domain › Vps5 0.64 48.0 3.00e-01 79.4% 67.8%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.82e-01 100.0% 67.8%
4025136 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 50.0 3.21e-01 85.3% 94.9%
3589630 243.4.1.4 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DUF1292 0.63 54.0 4.88e-01 92.6% 70.0%
3673251 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.63 49.0 3.70e-01 86.8% 34.3%
4012805 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.63 46.0 3.72e-01 77.9% 70.0%
3225768 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.62 54.0 4.07e-01 97.1% 55.9%
3272782 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.62 42.0 4.75e-01 76.5% 95.9%
3200706 2.1.1.23 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.62 50.0 3.87e-01 91.2% 65.6%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.75e-01 98.5% 72.9%
4479763 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.61 42.0 3.82e-01 72.1% 84.2%
3414877 4.27.1.1 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 0.61 54.0 4.18e-01 100.0% 44.7%
4927342 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 49.0 4.48e-01 88.2% 70.0%
3997130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 4.82e-01 100.0% 84.0%
3930170 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 3.86e-01 79.4% 83.6%
4022815 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 3.89e-01 100.0% 44.0%
4295399 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 54.0 4.75e-01 100.0% 82.0%
3450141 283.2.1.8 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.60 47.0 4.15e-01 85.3% 59.0%
3541127 2.1.1.170 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 0.60 46.0 4.54e-01 88.2% 78.7%
3254982 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.60 43.0 4.35e-01 79.4% 94.3%
3461759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 3.54e-01 82.4% 67.3%
3571085 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.21e-01 97.1% 74.4%
3734457 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 53.0 3.54e-01 100.0% 43.0%
3694763 375.1.1.222 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 0.59 46.0 3.75e-01 85.3% 48.5%
3960625 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 46.0 3.66e-01 88.2% 81.3%
3224865 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.59 43.0 2.93e-01 79.4% 46.4%
2769360 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.59 45.0 4.41e-01 85.3% 92.2%
5019287 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 37.0 3.48e-01 85.3% 51.8%
3693415 222.2.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase 0.58 49.0 4.51e-01 100.0% 93.7%
3289386 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 4.27e-01 86.8% 90.9%
3721944 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 49.0 3.13e-01 97.1% 29.9%
3586322 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.58 47.0 4.20e-01 94.1% 82.5%
4033933 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.57 44.0 3.73e-01 83.8% 49.6%
3575305 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.57 45.0 2.89e-01 88.2% 26.1%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 46.0 4.31e-01 92.6% 72.9%
3961460 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.57e-01 89.7% 71.3%
3168413 2.1.1.329 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29994 0.56 44.0 3.79e-01 85.3% 53.6%
3952896 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 46.0 3.85e-01 92.6% 79.8%
3955464 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 4.18e-01 91.2% 94.4%
3563416 5095.1.1.0 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen 0.56 43.0 4.42e-01 85.3% 93.8%
3662984 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 4.18e-01 88.2% 74.1%
3750530 2.1.1.269 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30822 0.56 44.0 3.64e-01 89.7% 57.0%
4023575 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 3.81e-01 83.8% 68.4%
3924550 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.55 48.0 3.74e-01 100.0% 59.4%
3313853 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 45.0 2.83e-01 97.1% 37.6%
4021411 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.54 43.0 3.72e-01 91.2% 87.0%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 47.0 3.95e-01 100.0% 60.0%
3361070 2003.1.2.102 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.54 46.0 2.88e-01 100.0% 36.4%
4505972 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 44.0 2.89e-01 95.6% 20.9%
3393575 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 43.0 3.32e-01 100.0% 60.0%
5049358 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 38.0 3.34e-01 82.4% 85.7%
D2 medium residues 86-126
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.72 54.0 3.49e-01 82.9% 35.5%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 57.0 4.72e-01 100.0% 67.1%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.67 52.0 3.10e-01 85.4% 21.1%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 54.0 4.20e-01 100.0% 95.3%
2xadA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.64 54.0 3.32e-01 95.1% 60.6%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.63 53.0 3.94e-01 100.0% 45.8%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.63 47.0 3.08e-01 85.4% 94.3%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.63 48.0 3.46e-01 90.2% 66.9%
1xgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 3.82e-01 82.9% 79.2%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.59 46.0 4.02e-01 100.0% 98.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 45.0 3.94e-01 100.0% 63.2%
3ohsX02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 46.0 2.96e-01 87.8% 98.6%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 3.70e-01 100.0% 45.8%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 43.0 3.07e-01 92.7% 55.4%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 39.0 2.86e-01 80.5% 25.0%
2a90A02 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 41.0 3.75e-01 100.0% 100.0%
1dhxA03 3.90.249.10 Alpha Beta › Alpha-Beta Complex › Hexon Major Viral Coat Protein; domain 3 › Hexon Major Viral Coat Protein, domain 3 0.50 39.0 2.52e-01 100.0% 71.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976762 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.80 69.0 5.69e-01 100.0% 93.3%
4131077 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 55.0 4.74e-01 100.0% 92.0%
4676848 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.68 54.0 4.70e-01 100.0% 92.0%
5043379 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 51.0 4.54e-01 92.7% 100.0%
3580620 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 44.0 2.84e-01 78.0% 17.1%
3214931 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.62 47.0 3.79e-01 87.8% 41.2%
5041711 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 47.0 4.27e-01 100.0% 95.7%
3620035 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.60 44.0 3.62e-01 87.8% 41.2%
3853965 5.1.4.534 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CATSPERB_C 0.59 50.0 3.21e-01 100.0% 22.5%
4950851 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 45.0 4.47e-01 97.6% 93.3%
3533152 11.1.1.1360 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERB_C 0.56 48.0 2.96e-01 100.0% 18.0%
3256453 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.54 43.0 3.93e-01 97.6% 98.3%