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NC_025447.1__YP_009101725.1__PBI_121Q_137__00131

Bact-Vir

NC_025447.1__YP_009101725.1__PBI_121Q_137__00131

Identity

Accession:
NC_025447 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Asteriusvirus› Escherichia_phage_121Q

TaxID: 1555202

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-99
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 48.0 5.25e-01 82.9% 88.1%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 5.13e-01 97.4% 93.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.54e-01 88.2% 90.3%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 39.0 3.62e-01 82.9% 53.1%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 45.0 2.82e-01 86.8% 47.5%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.58 50.0 4.36e-01 100.0% 75.8%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 3.89e-01 93.4% 62.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.54e-01 94.7% 95.5%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.58 44.0 3.96e-01 82.9% 88.9%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 45.0 3.70e-01 85.5% 52.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.57 43.0 4.57e-01 90.8% 100.0%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.14e-01 97.4% 80.0%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.57 45.0 4.21e-01 89.5% 94.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.60e-01 89.5% 100.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 4.27e-01 97.4% 89.4%
3hfiA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.54 40.0 3.44e-01 81.6% 93.4%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.86e-01 85.5% 76.4%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.66e-01 93.4% 73.2%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.67e-01 89.5% 80.2%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 4.02e-01 97.4% 94.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 4.36e-01 98.7% 97.0%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 41.0 4.10e-01 86.8% 82.9%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 40.0 3.58e-01 80.3% 80.6%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 4.13e-01 98.7% 92.2%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.20e-01 76.3% 61.9%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 36.0 2.57e-01 73.7% 37.9%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 44.0 3.67e-01 96.1% 56.6%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 44.0 3.64e-01 96.1% 56.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.52 37.0 3.23e-01 80.3% 86.8%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 36.0 2.62e-01 78.9% 37.7%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 30.0 3.34e-01 78.9% 76.7%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 42.0 3.30e-01 98.7% 77.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839369 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.74 50.0 5.00e-01 85.5% 67.5%
3388362 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 50.0 2.90e-01 85.5% 7.9%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.73 51.0 5.03e-01 86.8% 68.8%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.72 50.0 5.03e-01 86.8% 73.3%
3234923 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 48.0 5.09e-01 89.5% 100.0%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 48.0 4.63e-01 93.4% 72.2%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.28e-01 88.2% 77.1%
3583296 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 45.0 4.71e-01 90.8% 95.7%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.58 44.0 4.64e-01 90.8% 98.5%
3964928 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.57 40.0 3.90e-01 81.6% 67.1%
3890869 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 48.0 3.76e-01 100.0% 51.7%
2797459 220.1.1.3 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1,Retinal 0.56 48.0 4.33e-01 100.0% 85.0%
4957722 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 42.0 3.52e-01 93.4% 44.9%
3219546 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.56 47.0 3.93e-01 100.0% 64.7%
3256095 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 48.0 4.33e-01 100.0% 81.8%
3526272 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.56 48.0 3.95e-01 100.0% 66.0%
3505182 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 34.0 3.42e-01 81.6% 58.7%
2697431 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 46.0 4.22e-01 97.4% 82.4%
3470360 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 46.0 3.98e-01 100.0% 88.9%
4547666 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.55 47.0 4.06e-01 98.7% 76.8%
3939687 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 46.0 4.23e-01 94.7% 86.0%
3958768 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 4.11e-01 84.2% 93.8%
3952939 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.53 40.0 4.11e-01 82.9% 97.3%
3394752 5.1.5.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 0.53 42.0 2.76e-01 88.2% 89.2%
4891117 4038.1.1.11 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal 0.53 44.0 2.70e-01 98.7% 59.1%
3506373 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.52 44.0 3.78e-01 100.0% 76.3%
5025236 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 43.0 3.69e-01 94.7% 60.5%
224067 6098.1.1.1 ↗ a+b two layers › BACOVA_05496-like › BACOVA_05496-like › BACOVA_05496-like › DUF4738 0.52 37.0 3.23e-01 80.3% 86.8%
3931799 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 31.0 3.55e-01 81.6% 97.8%
2093820 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.51 45.0 2.83e-01 100.0% 51.2%
3622645 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 41.0 3.81e-01 88.2% 89.5%
3601108 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 34.0 3.17e-01 72.4% 89.5%
4667221 2003.1.2.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.50 43.0 3.29e-01 100.0% 69.1%