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NC_025452.1__YP_009102843.1__DA66_0003__00003
Bact-VirNC_025452.1__YP_009102843.1__DA66_0003__00003
Identity
- Accession:
- NC_025452 ↗
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Limestonevirus›
Dickeya_phage_RC-2014
TaxID: 1477406
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-93
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.79 | 53.0 | 5.48e-01 | 70.5% | 100.0% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 54.0 | 4.87e-01 | 72.1% | 61.0% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 58.0 | 5.69e-01 | 88.5% | 74.2% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 53.0 | 4.73e-01 | 72.1% | 51.7% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 52.0 | 4.60e-01 | 72.1% | 58.0% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 51.0 | 5.05e-01 | 70.5% | 74.6% |
| 3majA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 54.0 | 5.50e-01 | 77.0% | 78.3% |
| 1yyvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 53.0 | 4.35e-01 | 75.4% | 65.2% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 50.0 | 4.69e-01 | 78.7% | 56.6% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 50.0 | 4.73e-01 | 70.5% | 64.0% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 51.0 | 4.79e-01 | 72.1% | 66.7% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 53.0 | 4.60e-01 | 77.0% | 66.3% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 49.0 | 5.53e-01 | 73.8% | 100.0% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.72 | 63.0 | 4.99e-01 | 100.0% | 49.2% |
| 1cf7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 51.0 | 5.01e-01 | 77.0% | 79.1% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 4.89e-01 | 82.0% | 86.9% |
| 4yo2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 51.0 | 4.93e-01 | 77.0% | 78.9% |
| 2hr3D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 49.0 | 4.96e-01 | 72.1% | 74.2% |
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 57.0 | 5.67e-01 | 88.5% | 98.4% |
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.71 | 54.0 | 4.68e-01 | 83.6% | 54.2% |
| 1jhfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 48.0 | 4.69e-01 | 72.1% | 75.4% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 51.0 | 4.35e-01 | 77.0% | 66.7% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 50.0 | 5.24e-01 | 75.4% | 100.0% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 50.0 | 5.00e-01 | 77.0% | 95.2% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 50.0 | 4.90e-01 | 77.0% | 85.1% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 4.50e-01 | 72.1% | 72.0% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 49.0 | 4.77e-01 | 77.0% | 85.7% |
| 1c52A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.68 | 59.0 | 4.63e-01 | 100.0% | 68.7% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 48.0 | 4.58e-01 | 77.0% | 80.8% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 45.0 | 4.86e-01 | 75.4% | 100.0% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.63 | 45.0 | 3.14e-01 | 75.4% | 76.8% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.61 | 49.0 | 4.33e-01 | 90.2% | 59.6% |
| 3df8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 51.0 | 4.27e-01 | 95.1% | 67.9% |
| 1xc5A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 41.0 | 4.46e-01 | 70.5% | 100.0% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.22e-01 | 96.7% | 82.2% |
| 3f2gA00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 49.0 | 3.52e-01 | 100.0% | 91.7% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 4.40e-01 | 100.0% | 81.1% |
| 2cvzA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 43.0 | 3.48e-01 | 85.2% | 84.1% |
| 3szpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.82e-01 | 100.0% | 83.1% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.51 | 37.0 | 3.41e-01 | 80.3% | 92.9% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031508 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 62.0 | 6.75e-01 | 77.0% | 100.0% |
| 3957642 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 57.0 | 5.96e-01 | 73.8% | 80.0% |
| 4053059 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 55.0 | 5.40e-01 | 70.5% | 69.2% |
| 4028433 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 57.0 | 5.17e-01 | 75.4% | 61.3% |
| 4194508 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 53.0 | 5.58e-01 | 72.1% | 81.8% |
| 4558962 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 53.0 | 5.60e-01 | 73.8% | 81.8% |
| 5026287 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.75 | 54.0 | 4.62e-01 | 75.4% | 72.6% |
| 4987653 | 101.1.2.139 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_23 | 0.75 | 52.0 | 5.78e-01 | 75.4% | 97.8% |
| 5011614 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.75 | 54.0 | 5.30e-01 | 75.4% | 73.8% |
| 5053846 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.75 | 57.0 | 5.12e-01 | 82.0% | 90.6% |
| 3483711 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 54.0 | 5.61e-01 | 77.0% | 96.4% |
| 3652823 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 53.0 | 4.84e-01 | 75.4% | 65.0% |
| 3900411 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.74 | 54.0 | 4.73e-01 | 77.0% | 52.8% |
| 4976095 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.74 | 49.0 | 5.16e-01 | 70.5% | 76.4% |
| 3668069 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.74 | 54.0 | 5.52e-01 | 78.7% | 81.7% |
| 3621329 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.74 | 53.0 | 4.54e-01 | 75.4% | 54.7% |
| 4098952 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.74 | 53.0 | 4.83e-01 | 75.4% | 65.0% |
| 4031756 | 101.1.2.645 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_40 | 0.74 | 50.0 | 4.48e-01 | 72.1% | 50.6% |
| 2613 | 101.1.2.105 ↗ | alpha arrays › HTH › HTH › winged helix domain › MotA_activ | 0.74 | 53.0 | 4.60e-01 | 77.0% | 66.3% |
| 3488676 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.73 | 53.0 | 5.12e-01 | 77.0% | 74.3% |
| 5051998 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.73 | 53.0 | 4.09e-01 | 77.0% | 53.3% |
| 3654479 | 101.1.2.361 ↗ | alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-binding | 0.73 | 53.0 | 4.81e-01 | 78.7% | 61.2% |
| 3941922 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 49.0 | 5.18e-01 | 73.8% | 78.2% |
| 3632013 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 52.0 | 5.61e-01 | 75.4% | 98.0% |
| 4954765 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 51.0 | 5.32e-01 | 73.8% | 81.8% |
| 3392384 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 51.0 | 4.81e-01 | 75.4% | 69.3% |
| 3167818 | 101.1.1.207 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF6581 | 0.72 | 51.0 | 4.30e-01 | 75.4% | 54.3% |
| 5063967 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 52.0 | 5.27e-01 | 77.0% | 88.3% |
| 3197445 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 51.0 | 5.27e-01 | 75.4% | 85.5% |
| 4932994 | 101.1.1.25 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF433 | 0.71 | 54.0 | 5.21e-01 | 82.0% | 77.1% |
| 3174756 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.71 | 55.0 | 5.39e-01 | 83.6% | 86.2% |
| 4583223 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.71 | 54.0 | 5.62e-01 | 83.6% | 92.7% |
| 3943148 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.71 | 53.0 | 5.65e-01 | 86.9% | 100.0% |
| 3969534 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.71 | 48.0 | 5.00e-01 | 72.1% | 78.2% |
| 5010328 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 53.0 | 5.51e-01 | 83.6% | 96.4% |
| 4159768 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 52.0 | 5.59e-01 | 88.5% | 100.0% |
| 4959580 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.69 | 44.0 | 4.77e-01 | 70.5% | 80.0% |
| 3588286 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.69 | 52.0 | 5.53e-01 | 88.5% | 100.0% |
| 3647798 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 49.0 | 4.87e-01 | 77.0% | 93.8% |
| 3756527 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.68 | 52.0 | 4.69e-01 | 83.6% | 92.9% |
| 4990374 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.67 | 46.0 | 3.67e-01 | 73.8% | 38.5% |
| 4945039 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.67 | 50.0 | 5.10e-01 | 86.9% | 85.0% |
| 5056682 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 56.0 | 5.43e-01 | 96.7% | 91.4% |
| 4012954 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 47.0 | 4.60e-01 | 78.7% | 72.9% |
| 4608916 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.65 | 45.0 | 4.66e-01 | 72.1% | 80.0% |
| 3882189 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 44.0 | 4.74e-01 | 72.1% | 90.0% |
| 3515936 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.64 | 50.0 | 5.07e-01 | 98.4% | 90.0% |
| 4153644 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.64 | 53.0 | 5.37e-01 | 95.1% | 100.0% |
| 4987454 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.62 | 51.0 | 4.59e-01 | 96.7% | 80.0% |
| 4947701 | 101.1.2.882 ↗ | alpha arrays › HTH › HTH › winged helix domain › FeoA | 0.61 | 51.0 | 4.43e-01 | 96.7% | 75.0% |
| 4964802 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 43.0 | 4.40e-01 | 82.0% | 78.3% |
| 4970916 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 48.0 | 4.17e-01 | 100.0% | 81.9% |
| 5062183 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.32e-01 | 96.7% | 76.0% |
| 5011194 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.55 | 45.0 | 4.54e-01 | 95.1% | 95.0% |