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NC_025452.1__YP_009102983.1__DA66_0144__00143
Bact-VirNC_025452.1__YP_009102983.1__DA66_0144__00143
Identity
- Accession:
- NC_025452 ↗
- Kingdom:
- phage
Quality
68.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Limestonevirus›
Dickeya_phage_RC-2014
TaxID: 1477406
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-103
Domain cluster:
rep: IMGVR_UViG_3300028196_001314-3300028196-Ga0257114_10067682__D9-83
D2
high
residues 207-279
Domain cluster:
rep: BML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00122__D146-216
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 35.0 | 4.11e-01 | 83.6% | 84.6% |
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 36.0 | 3.86e-01 | 87.7% | 80.3% |
| 5du9B02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.51 | 40.0 | 2.87e-01 | 86.3% | 88.9% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 41.0 | 3.92e-01 | 100.0% | 76.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.68 | 47.0 | 4.48e-01 | 98.6% | 62.4% |
| 3951529 | 101.1.9.24 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_66 | 0.53 | 39.0 | 3.59e-01 | 79.5% | 91.6% |
D3
medium
residues 113-199