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NC_025461.1__YP_009103501.1__S-CBP3_0013__00014
Bact-VirNC_025461.1__YP_009103501.1__S-CBP3_0013__00014
Identity
- Accession:
- NC_025461 ↗
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Lirvirus›
Synechococcus_phage_S-CBP3
TaxID: 756276
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-93_165-216
Domain cluster:
rep: IMGVR_UViG_3300025156_000428-3300025156-Ga0209834_1000016635__D1-193
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02511.21 best | Thy1 | 81.1 | 1.30e-22 | 62.2% | 46.6% |
| PF02511.21 | Thy1 | 29.4 | 8.80e-07 | 34.8% | 24.1% |
D2
high
residues 107-159
Domain cluster:
rep: NC_049371.1__YP_009875501.1__HYO98_gp23__00023__D312-368
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzbA02 | 1.20.5.3070 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.99 | 69.0 | 7.94e-01 | 71.7% | 95.0% |
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.86 | 67.0 | 4.33e-01 | 81.1% | 21.7% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.83 | 75.0 | 4.86e-01 | 100.0% | 23.8% |
| 4lctB00 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.76 | 65.0 | 3.91e-01 | 94.3% | 30.5% |
| 3v9rB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.67 | 58.0 | 5.31e-01 | 100.0% | 76.4% |
| 3kttB03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.53 | 40.0 | 3.04e-01 | 88.7% | 56.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3495243 | 316.1.1.30 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PAP_NTPase | 0.93 | 65.0 | 4.28e-01 | 73.6% | 21.1% |
| 4628182 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.89 | 81.0 | 5.09e-01 | 100.0% | 22.4% |
| 4667663 | 148.1.1.96 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP_like | 0.83 | 70.0 | 5.79e-01 | 100.0% | 53.3% |
| 5024487 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.83 | 58.0 | 3.76e-01 | 79.2% | 18.6% |
| 4779949 | 210.1.4.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 | 0.80 | 57.0 | 4.00e-01 | 79.2% | 25.5% |
| 4102574 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.78 | 67.0 | 4.22e-01 | 100.0% | 20.4% |
| 3212545 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.72 | 56.0 | 3.74e-01 | 84.9% | 23.3% |
| 4938196 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.58 | 53.0 | 4.18e-01 | 100.0% | 82.9% |
| 3578060 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.52 | 41.0 | 3.22e-01 | 92.5% | 69.2% |