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NC_025462.1__YP_009103557.1__vB_AbaM_Acibel004_17__00017
Bact-VirNC_025462.1__YP_009103557.1__vB_AbaM_Acibel004_17__00017
Identity
- Accession:
- NC_025462 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Taxonomy
TaxID: 1481186
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-121
Domain cluster:
rep: ON857932.1__UVN13510.1__FBPa8_0046__00045__D31-102
D2
medium
residues 122-319
Domain cluster:
rep: ribonucleoside-diphosphate_reductase_small_chain__YP_009001342__Pithovirus_sibericum__1450746__D163-306
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00268.28 best | Ribonuc_red_sm | 69.9 | 3.40e-19 | 84.9% | 57.3% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5olkB01 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.91 | 81.0 | 7.00e-01 | 91.4% | 65.9% |
| 4a5dB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.90 | 62.0 | 5.86e-01 | 85.4% | 60.3% |
| 2aniA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.88 | 77.0 | 6.34e-01 | 89.9% | 58.0% |
| 1h0oA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.87 | 73.0 | 6.24e-01 | 90.4% | 58.7% |
| 6eboA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.86 | 77.0 | 6.45e-01 | 100.0% | 58.8% |
| 1biqA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.86 | 77.0 | 6.23e-01 | 92.4% | 62.1% |
| 4bmoA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.84 | 75.0 | 6.47e-01 | 94.9% | 63.1% |
| 5ux2B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.78 | 58.0 | 5.66e-01 | 84.8% | 70.6% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 37.0 | 5.05e-01 | 77.8% | 99.0% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 35.0 | 4.76e-01 | 77.3% | 96.3% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 37.0 | 4.62e-01 | 78.8% | 94.2% |
| 2yevA03 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.63 | 35.0 | 3.68e-01 | 79.8% | 57.6% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.62 | 35.0 | 3.72e-01 | 83.3% | 60.6% |
| 2cmrA00 | 1.20.58.1860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 40.0 | 4.14e-01 | 86.9% | 66.7% |
| 3urzA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 34.0 | 3.39e-01 | 90.4% | 51.0% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 37.0 | 4.25e-01 | 74.2% | 81.2% |
| 2qr4A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.52 | 38.0 | 4.27e-01 | 95.5% | 94.9% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.52 | 32.0 | 3.41e-01 | 78.8% | 68.0% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 35.0 | 3.91e-01 | 75.8% | 91.0% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 36.0 | 3.71e-01 | 75.8% | 73.6% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.97e-01 | 78.3% | 86.8% |
| 6m4eA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 42.0 | 3.12e-01 | 89.4% | 62.8% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 35.0 | 3.88e-01 | 75.8% | 91.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 56563 | 150.1.2.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase | 0.88 | 75.0 | 6.52e-01 | 91.4% | 61.3% |
| 2391405 | 150.1.2.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm | 0.88 | 77.0 | 6.38e-01 | 99.0% | 56.7% |
| 1726039 | 150.1.2.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm | 0.87 | 78.0 | 6.28e-01 | 91.9% | 61.9% |
| 2846952 | 150.1.2.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm | 0.87 | 75.0 | 6.28e-01 | 92.9% | 56.5% |
| 2388926 | 150.1.2.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm | 0.87 | 81.0 | 6.81e-01 | 99.0% | 63.3% |
| 436631 | 150.1.2.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm | 0.86 | 77.0 | 6.15e-01 | 91.9% | 59.7% |
| 4481595 | 150.1.2.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm | 0.86 | 82.0 | 6.73e-01 | 99.0% | 60.3% |
| 56518 | 150.1.2.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase | 0.86 | 76.0 | 6.18e-01 | 91.9% | 61.9% |
| 4187493 | 603.1.1.103 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 | 0.65 | 37.0 | 4.25e-01 | 78.3% | 75.2% |
| 3741603 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.62 | 35.0 | 4.23e-01 | 79.3% | 84.0% |
| 3212117 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.61 | 37.0 | 4.07e-01 | 84.8% | 73.8% |
| 3999032 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.59 | 32.0 | 3.63e-01 | 73.7% | 67.7% |
| 3579239 | 633.7.1.0 ↗ | alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like | 0.58 | 36.0 | 4.07e-01 | 81.3% | 79.4% |
| 3584684 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.57 | 40.0 | 3.26e-01 | 70.7% | 67.7% |
| 54352 | 133.2.1.0 ↗ | alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like | 0.56 | 37.0 | 3.77e-01 | 89.9% | 66.7% |
| 3247685 | 5001.1.1.27 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre | 0.56 | 39.0 | 3.45e-01 | 70.2% | 60.0% |
| 3222069 | 5001.1.1.33 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh | 0.55 | 39.0 | 3.26e-01 | 71.2% | 78.0% |
| 4525691 | 601.27.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › YkyA | 0.54 | 36.0 | 3.65e-01 | 80.8% | 67.7% |
| 3718958 | 5082.1.1.0 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like | 0.54 | 47.0 | 4.62e-01 | 93.9% | 98.1% |
| 3226018 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 39.0 | 3.59e-01 | 75.3% | 89.2% |
| 3785951 | 109.4.1.1307 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps52_CC, Vps52_C | 0.53 | 44.0 | 3.46e-01 | 86.9% | 64.9% |
| 5058790 | 133.2.1.1 ↗ | alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C | 0.53 | 38.0 | 3.96e-01 | 91.4% | 78.4% |
| 4946483 | 133.2.1.1 ↗ | alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C | 0.52 | 38.0 | 3.96e-01 | 94.4% | 78.4% |
| 3211805 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 40.0 | 3.14e-01 | 79.8% | 89.9% |
| 3704416 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 3.63e-01 | 83.3% | 93.3% |
| 4157336 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.50 | 37.0 | 3.89e-01 | 75.8% | 91.4% |
| 3002372 | 129.1.1.5 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Ferric_reduct | 0.50 | 38.0 | 3.58e-01 | 78.3% | 87.7% |
D3
medium
residues 438-511_640-828_900-966
Domain cluster:
rep: ribonucleotide_reductase_alpha_subunit__YP_009259397__Short-finned_eel_ranavirus__638660__D54-120_213-414_477-502
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 74.8 | 8.00e-21 | 48.8% | 28.8% |
| PF02867.21 | Ribonuc_red_lgC | 44.4 | 1.30e-11 | 15.8% | 9.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1peqA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.92 | 78.0 | 6.65e-01 | 86.1% | 100.0% |
| 1r1rA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.91 | 77.0 | 6.45e-01 | 86.1% | 100.0% |
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.88 | 85.0 | 6.52e-01 | 98.2% | 85.4% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.87 | 85.0 | 6.55e-01 | 98.5% | 92.8% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.80 | 78.0 | 6.50e-01 | 99.4% | 90.4% |
| 1cm5A00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.70 | 67.0 | 4.95e-01 | 99.4% | 84.5% |
| 4g6uA02 | 3.40.1350.110 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.65 | 27.0 | 4.09e-01 | 84.5% | 89.1% |
| 1vcvA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 32.0 | 3.75e-01 | 86.4% | 70.8% |
| 4m1aA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.57 | 20.0 | 3.38e-01 | 75.2% | 90.7% |
| 3gwqA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.57 | 32.0 | 3.74e-01 | 84.2% | 75.5% |
| 1zl0B02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.56 | 25.0 | 3.75e-01 | 82.4% | 95.7% |
| 3sggA02 | 3.20.20.490 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › GxGYxYP glycoside hydrolase, C-terminal domain | 0.56 | 31.0 | 3.53e-01 | 93.0% | 68.5% |
| 1zlpA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.53 | 32.0 | 3.41e-01 | 72.7% | 65.1% |
| 7wd3A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 27.0 | 3.65e-01 | 82.1% | 98.8% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2472944 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.98 | 78.0 | 6.86e-01 | 80.6% | 98.6% |
| 3500621 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 74.0 | 6.12e-01 | 80.6% | 100.0% |
| 996122 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 75.0 | 5.93e-01 | 81.8% | 92.4% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 74.0 | 5.92e-01 | 80.9% | 97.3% |
| 2504767 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 72.0 | 6.03e-01 | 79.4% | 100.0% |
| 4015532 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.92 | 74.0 | 5.88e-01 | 81.2% | 92.7% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 72.0 | 6.02e-01 | 80.0% | 100.0% |
| 3590466 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 73.0 | 5.95e-01 | 81.2% | 100.0% |
| 4145444 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 74.0 | 6.07e-01 | 81.8% | 99.0% |
| 3942765 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 73.0 | 6.04e-01 | 81.8% | 98.1% |
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 75.0 | 6.12e-01 | 83.3% | 98.5% |
| 3963206 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 74.0 | 6.05e-01 | 82.7% | 96.8% |
| 4937370 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 71.0 | 5.59e-01 | 79.7% | 98.8% |
| 5040104 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.90 | 75.0 | 6.22e-01 | 83.9% | 97.3% |
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.90 | 74.0 | 5.99e-01 | 83.0% | 95.4% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.90 | 71.0 | 5.63e-01 | 80.6% | 98.1% |
| 4564490 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.88 | 72.0 | 5.82e-01 | 83.0% | 96.4% |
| 4822330 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.87 | 68.0 | 5.97e-01 | 80.0% | 97.2% |
| 4985374 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.86 | 85.0 | 6.76e-01 | 100.0% | 92.7% |
| 4994375 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.86 | 67.0 | 5.67e-01 | 79.1% | 100.0% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.84 | 82.0 | 6.61e-01 | 98.8% | 94.0% |
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.82 | 73.0 | 5.84e-01 | 91.2% | 99.0% |
| 5030208 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.81 | 75.0 | 5.83e-01 | 93.9% | 99.7% |
| 5051775 | 2500.1.1.9 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › RNR-II_ins_dom | 0.80 | 65.0 | 5.52e-01 | 82.1% | 97.8% |
| 3275621 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.80 | 65.0 | 5.77e-01 | 83.3% | 93.8% |
| 4208725 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.79 | 65.0 | 5.47e-01 | 83.9% | 96.0% |
| 4190659 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.77 | 73.0 | 5.51e-01 | 96.4% | 99.6% |
| 5058546 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.77 | 73.0 | 5.71e-01 | 96.7% | 98.0% |
| 4963031 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 72.0 | 5.64e-01 | 96.7% | 96.7% |
| 4942624 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.73 | 58.0 | 5.37e-01 | 80.9% | 90.0% |
| 5012376 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.70 | 67.0 | 5.39e-01 | 100.0% | 93.2% |
| 4980727 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.62 | 17.0 | 3.14e-01 | 74.5% | 76.8% |
| 5005233 | 2004.1.1.67 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA | 0.62 | 32.0 | 3.18e-01 | 97.6% | 46.6% |
| 4959801 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 23.0 | 3.65e-01 | 84.5% | 95.0% |
| 5064586 | 2003.1.1.367 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DEAD | 0.54 | 27.0 | 3.50e-01 | 85.8% | 81.6% |
| 3941023 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.53 | 32.0 | 3.91e-01 | 88.2% | 88.4% |
| 4464927 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.51 | 25.0 | 3.40e-01 | 94.8% | 86.9% |
| 3276431 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 31.0 | 3.83e-01 | 98.2% | 96.0% |
D4
medium
residues 512-603
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 38.6 | 7.50e-10 | 97.8% | 15.7% |
CATH (61)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.92 | 88.0 | 5.11e-01 | 100.0% | 15.7% |
| 1peqA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.92 | 83.0 | 5.05e-01 | 100.0% | 18.2% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.88 | 82.0 | 4.81e-01 | 100.0% | 14.4% |
| 1r1rA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.85 | 80.0 | 4.85e-01 | 100.0% | 19.7% |
| 3dnfA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.77 | 42.0 | 4.17e-01 | 77.2% | 50.5% |
| 2csuA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.73 | 58.0 | 4.82e-01 | 100.0% | 48.2% |
| 4jc8A01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.69 | 52.0 | 4.55e-01 | 100.0% | 53.7% |
| 6gt9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 45.0 | 3.62e-01 | 100.0% | 34.5% |
| 1rvkA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.68 | 57.0 | 4.09e-01 | 100.0% | 31.8% |
| 4b3lA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 60.0 | 3.86e-01 | 100.0% | 37.5% |
| 3dmyA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.68 | 57.0 | 4.75e-01 | 100.0% | 52.8% |
| 4impA02 | 3.40.50.11460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 59.0 | 4.59e-01 | 100.0% | 50.2% |
| 4l69A02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.67 | 48.0 | 3.88e-01 | 77.2% | 39.2% |
| 3sqsA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.66 | 55.0 | 4.04e-01 | 100.0% | 33.9% |
| 3g1wA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 44.0 | 3.83e-01 | 100.0% | 44.5% |
| 2hrzA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 57.0 | 4.30e-01 | 100.0% | 50.9% |
| 5ilgB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 56.0 | 4.12e-01 | 100.0% | 45.0% |
| 4zxoA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 55.0 | 3.82e-01 | 100.0% | 40.7% |
| 3tp4B01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 55.0 | 3.75e-01 | 100.0% | 37.9% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 45.0 | 3.72e-01 | 100.0% | 41.3% |
| 3ogzA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.63 | 52.0 | 3.31e-01 | 90.2% | 19.4% |
| 1p9oA00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.63 | 53.0 | 3.81e-01 | 100.0% | 32.0% |
| 8dtpC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 54.0 | 3.92e-01 | 95.7% | 48.8% |
| 4k05A01 | 3.40.50.12170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF07075, DUF1343 | 0.62 | 51.0 | 3.78e-01 | 88.0% | 51.3% |
| 3rcyA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.62 | 55.0 | 4.03e-01 | 100.0% | 36.6% |
| 4jz8B00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.61 | 46.0 | 3.22e-01 | 80.4% | 62.7% |
| 2vx7A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 54.0 | 3.64e-01 | 100.0% | 27.8% |
| 6y1xB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 53.0 | 4.00e-01 | 100.0% | 75.5% |
| 5e7pA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 49.0 | 4.04e-01 | 100.0% | 47.4% |
| 6cblD01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.61 | 46.0 | 3.54e-01 | 98.9% | 34.6% |
| 3no4A00 | 3.40.50.10310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase | 0.61 | 51.0 | 3.77e-01 | 95.7% | 53.4% |
| 5kinC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 54.0 | 3.93e-01 | 100.0% | 38.9% |
| 3gv0A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 42.0 | 3.73e-01 | 100.0% | 50.4% |
| 2podA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.60 | 52.0 | 3.86e-01 | 100.0% | 36.0% |
| 3q9cA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.60 | 49.0 | 3.37e-01 | 100.0% | 24.6% |
| 4bwvA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 45.0 | 3.43e-01 | 97.8% | 33.0% |
| 3r4vA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.60 | 55.0 | 3.78e-01 | 100.0% | 39.9% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 46.0 | 4.39e-01 | 96.7% | 70.6% |
| 3slgC02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.58 | 39.0 | 3.97e-01 | 78.3% | 69.6% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.58 | 41.0 | 4.18e-01 | 73.9% | 77.0% |
| 2iucA00 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.58 | 50.0 | 3.47e-01 | 100.0% | 39.1% |
| 2c83A02 | 3.40.50.11110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, C-terminal GT-B Rossman nucleotide-binding domain | 0.57 | 42.0 | 3.46e-01 | 83.7% | 40.9% |
| 1z7bA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.57 | 38.0 | 3.93e-01 | 77.2% | 71.9% |
| 2ca6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.57 | 49.0 | 3.41e-01 | 100.0% | 32.7% |
| 3zbqA00 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.57 | 48.0 | 3.32e-01 | 93.5% | 70.8% |
| 7f8aA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 41.0 | 3.45e-01 | 100.0% | 42.4% |
| 2xitA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 48.0 | 3.54e-01 | 100.0% | 35.1% |
| 5znqA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 50.0 | 3.98e-01 | 100.0% | 61.7% |
| 3szuA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.55 | 42.0 | 4.06e-01 | 80.4% | 73.0% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 48.0 | 3.58e-01 | 100.0% | 42.9% |
| 2a5yC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 39.0 | 3.20e-01 | 77.2% | 76.9% |
| 2qmmA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.54 | 40.0 | 3.25e-01 | 82.6% | 87.2% |
| 1yvrA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.53 | 47.0 | 3.68e-01 | 100.0% | 51.2% |
| 4rgyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 3.53e-01 | 100.0% | 61.2% |
| 2vosA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 44.0 | 3.18e-01 | 100.0% | 60.5% |
| 1edzA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.52 | 41.0 | 3.63e-01 | 84.8% | 64.9% |
| 2w2kA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 39.0 | 3.39e-01 | 100.0% | 51.0% |
| 3cqyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 44.0 | 3.63e-01 | 100.0% | 94.0% |
| 1pd0A05 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 37.0 | 3.33e-01 | 77.2% | 83.6% |
| 1afwB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 39.0 | 3.05e-01 | 83.7% | 53.1% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.50 | 43.0 | 3.63e-01 | 100.0% | 85.4% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937370 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 89.0 | 5.22e-01 | 100.0% | 15.9% |
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 89.0 | 5.30e-01 | 100.0% | 18.7% |
| 4963031 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 89.0 | 5.20e-01 | 100.0% | 23.5% |
| 3958480 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 89.0 | 5.65e-01 | 100.0% | 27.0% |
| 3590466 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 89.0 | 5.28e-01 | 100.0% | 18.3% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 88.0 | 5.21e-01 | 100.0% | 17.9% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 87.0 | 5.14e-01 | 100.0% | 16.8% |
| 3500621 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 88.0 | 5.26e-01 | 100.0% | 19.2% |
| 4145444 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 87.0 | 5.23e-01 | 100.0% | 19.0% |
| 3942765 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 87.0 | 5.22e-01 | 100.0% | 18.9% |
| 3963206 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 87.0 | 5.21e-01 | 100.0% | 18.6% |
| 4564490 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 87.0 | 5.17e-01 | 100.0% | 17.7% |
| 2504767 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 87.0 | 5.23e-01 | 100.0% | 18.7% |
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 86.0 | 5.15e-01 | 100.0% | 17.6% |
| 4985374 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 86.0 | 5.09e-01 | 100.0% | 16.7% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 86.0 | 5.19e-01 | 100.0% | 19.6% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.91 | 86.0 | 5.11e-01 | 100.0% | 17.5% |
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.90 | 86.0 | 5.09e-01 | 100.0% | 16.7% |
| 5063882 | 1074.1.1.6 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC | 0.90 | 86.0 | 5.53e-01 | 100.0% | 26.8% |
| 4994375 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.90 | 85.0 | 5.14e-01 | 100.0% | 19.2% |
| 3275621 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.73 | 68.0 | 4.26e-01 | 100.0% | 22.7% |
| 4073714 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.71 | 60.0 | 4.25e-01 | 100.0% | 31.0% |
| 4975517 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.70 | 47.0 | 3.66e-01 | 79.3% | 34.6% |
| 4973581 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.69 | 61.0 | 4.30e-01 | 100.0% | 31.6% |
| 5076653 | 2007.3.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 | 0.68 | 60.0 | 4.85e-01 | 100.0% | 52.8% |
| 4572718 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.67 | 48.0 | 3.33e-01 | 81.5% | 24.3% |
| 4032935 | 7515.1.1.1 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Alk_phosphatase | 0.66 | 53.0 | 3.40e-01 | 87.0% | 42.7% |
| 3559955 | 2007.15.1.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd, DRHyd-ASK | 0.65 | 53.0 | 4.20e-01 | 100.0% | 43.2% |
| 4513483 | 7516.1.1.5 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD | 0.65 | 49.0 | 3.67e-01 | 84.8% | 33.2% |
| 2570417 | 2002.1.1.89 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_26 | 0.65 | 57.0 | 3.84e-01 | 100.0% | 39.8% |
| 3738058 | 247.1.1.7 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › PDEase_II | 0.65 | 56.0 | 3.92e-01 | 100.0% | 44.6% |
| 3514027 | 300.1.1.17 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 | 0.63 | 54.0 | 4.14e-01 | 100.0% | 40.9% |
| 3585701 | 7512.1.1.18 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn | 0.63 | 51.0 | 3.71e-01 | 88.0% | 71.4% |
| 3257723 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.63 | 51.0 | 4.41e-01 | 100.0% | 54.8% |
| 3219574 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.62 | 53.0 | 4.42e-01 | 100.0% | 53.3% |
| 3703695 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.62 | 53.0 | 3.92e-01 | 96.7% | 66.3% |
| 5041906 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.62 | 55.0 | 3.65e-01 | 100.0% | 26.8% |
| 3278483 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.62 | 53.0 | 3.52e-01 | 100.0% | 27.3% |
| 3704569 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.61 | 53.0 | 4.21e-01 | 100.0% | 46.2% |
| 3457145 | 2004.1.1.462 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 | 0.61 | 53.0 | 4.34e-01 | 100.0% | 50.6% |
| 3253646 | 2004.1.1.425 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, DUF815 | 0.61 | 51.0 | 4.13e-01 | 100.0% | 46.3% |
| 4001466 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.60 | 52.0 | 3.90e-01 | 100.0% | 40.0% |
| None | — | 0.60 | 53.0 | 3.83e-01 | 100.0% | 46.7% | |
| 2792661 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.60 | 52.0 | 3.70e-01 | 100.0% | 42.0% |
| 3637147 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 53.0 | 3.78e-01 | 100.0% | 65.4% |
| 4463265 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.60 | 54.0 | 3.89e-01 | 100.0% | 79.6% |
| 5006800 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.60 | 53.0 | 3.89e-01 | 100.0% | 37.3% |
| 3494146 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.59 | 52.0 | 3.73e-01 | 100.0% | 33.1% |
| 5076764 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.58 | 41.0 | 4.15e-01 | 73.9% | 74.4% |
| 4060032 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.58 | 51.0 | 4.17e-01 | 100.0% | 52.0% |
| 5072748 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.58 | 40.0 | 3.73e-01 | 73.9% | 56.5% |
| 3320588 | 2006.1.6.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Copine | 0.58 | 50.0 | 4.33e-01 | 100.0% | 60.0% |
| 3731703 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.58 | 52.0 | 4.54e-01 | 100.0% | 70.0% |
| 3666617 | 2002.1.1.64 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 | 0.58 | 51.0 | 3.33e-01 | 100.0% | 30.9% |
| 1717714 | 7512.1.1.29 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PM0188 | 0.58 | 42.0 | 3.51e-01 | 83.7% | 42.1% |
| 3576751 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 50.0 | 3.82e-01 | 98.9% | 68.4% |
| 3786342 | 7515.1.1.1 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Alk_phosphatase | 0.57 | 49.0 | 3.22e-01 | 100.0% | 46.7% |
| 4153370 | 7512.1.1.19 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › NodZ | 0.57 | 42.0 | 3.51e-01 | 83.7% | 42.9% |
| 5038206 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.57 | 42.0 | 3.78e-01 | 81.5% | 56.8% |
| 4969477 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.57 | 49.0 | 3.47e-01 | 97.8% | 34.3% |
| 5038035 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.56 | 37.0 | 3.73e-01 | 73.9% | 65.3% |
| 5062518 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.55 | 39.0 | 3.82e-01 | 75.0% | 67.6% |
| 4369321 | 7532.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK | 0.55 | 48.0 | 4.02e-01 | 95.7% | 60.0% |
| 5023883 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.55 | 39.0 | 3.86e-01 | 75.0% | 70.0% |
| 5027880 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.54 | 38.0 | 3.84e-01 | 75.0% | 72.6% |
| 3786819 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.54 | 47.0 | 3.24e-01 | 100.0% | 84.8% |
| 3203047 | 2006.1.4.29 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN-like_DDX60 | 0.53 | 44.0 | 3.45e-01 | 93.5% | 51.9% |
| 3367038 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 41.0 | 3.97e-01 | 83.7% | 91.3% |
| 5055270 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.53 | 45.0 | 3.25e-01 | 97.8% | 42.1% |
| 4153819 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.52 | 37.0 | 3.64e-01 | 75.0% | 70.0% |