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NC_025463.1__YP_009103730.1__S144_34__00034

Bact-Vir

NC_025463.1__YP_009103730.1__S144_34__00034

Identity

Accession:
NC_025463 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/44

TaxID: 1458862

Cluster

View cluster (52 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-17_33-98
PDB
Domain cluster: rep: MW073017.1__QPB08573.1__X__00094__D7-13_31-89
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p3hB00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.79 75.0 6.69e-01 100.0% 88.8%
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.78 72.0 6.44e-01 100.0% 86.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 41.0 4.27e-01 87.8% 67.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 39.0 3.97e-01 77.0% 59.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 36.0 3.81e-01 87.8% 74.2%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 36.0 3.30e-01 71.6% 79.4%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.32e-01 79.7% 51.4%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 36.0 3.13e-01 73.0% 97.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3674955 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.83 70.0 6.86e-01 98.6% 82.5%
4147631 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.83 71.0 7.12e-01 100.0% 89.3%
4173931 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.81 77.0 6.95e-01 100.0% 90.5%
3252896 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.80 75.0 6.82e-01 100.0% 92.6%
4082853 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.80 75.0 6.84e-01 100.0% 90.4%
3508217 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.80 74.0 6.39e-01 100.0% 89.1%
4378688 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 75.0 6.77e-01 100.0% 90.5%
4341607 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 74.0 6.65e-01 100.0% 87.8%
4024554 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 74.0 6.60e-01 100.0% 90.8%
3938500 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 71.0 6.62e-01 97.3% 93.3%
4029028 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 73.0 6.51e-01 100.0% 87.0%
3175923 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.77 72.0 6.42e-01 100.0% 87.0%
2794380 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.77 70.0 6.45e-01 100.0% 88.2%
4417276 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.75 69.0 6.21e-01 100.0% 92.0%
2794381 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.74 67.0 5.79e-01 100.0% 78.6%
455 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.62 57.0 4.42e-01 100.0% 78.6%
3396896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.15e-01 93.2% 82.7%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.56e-01 89.2% 71.4%