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NC_025470.1__YP_009104113.1__S140_115__00112

Bact-Vir

NC_025470.1__YP_009104113.1__S140_115__00112

Identity

Accession:
NC_025470 ↗
Kingdom:
phage

Quality

63.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/40

TaxID: 1458860

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-77
PDB
Domain cluster: rep: NC_029013.1__YP_009218746.1__AVU18_gp176__00208__D176-242
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.71 60.0 5.75e-01 100.0% 82.5%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 5.17e-01 100.0% 93.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 4.73e-01 100.0% 72.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.01e-01 100.0% 82.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.76e-01 100.0% 73.5%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 57.0 5.53e-01 100.0% 85.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 43.0 4.90e-01 100.0% 93.8%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.79e-01 100.0% 90.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 42.0 3.90e-01 100.0% 51.8%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 5.06e-01 100.0% 100.0%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 44.0 3.67e-01 100.0% 39.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 5.16e-01 100.0% 95.0%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.65e-01 100.0% 71.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.56e-01 100.0% 80.6%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 53.0 5.16e-01 100.0% 88.2%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.90e-01 100.0% 93.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.63e-01 100.0% 73.1%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.62 38.0 4.52e-01 94.1% 97.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.51e-01 100.0% 83.9%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 44.0 4.66e-01 100.0% 88.1%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.52e-01 100.0% 94.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.81e-01 100.0% 93.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.32e-01 100.0% 74.3%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 47.0 3.84e-01 100.0% 46.8%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.65e-01 100.0% 84.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 42.0 4.27e-01 100.0% 77.3%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.59 37.0 3.97e-01 73.5% 74.1%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 4.28e-01 92.6% 80.3%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 4.28e-01 92.6% 95.1%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.69e-01 100.0% 91.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.84e-01 100.0% 95.3%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.78e-01 100.0% 95.3%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.90e-01 100.0% 98.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.58 45.0 4.63e-01 100.0% 92.1%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.17e-01 94.1% 89.3%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.55e-01 100.0% 88.6%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.88e-01 91.2% 88.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.35e-01 100.0% 87.9%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.57e-01 97.1% 43.5%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.56 38.0 3.59e-01 72.1% 86.9%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.46e-01 100.0% 85.3%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.19e-01 100.0% 94.3%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 4.00e-01 100.0% 96.7%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.94e-01 98.5% 96.6%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.68e-01 89.7% 94.9%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.66e-01 100.0% 82.1%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.85e-01 98.5% 42.8%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.14e-01 98.5% 65.4%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.69e-01 100.0% 82.9%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.09e-01 97.1% 65.6%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.19e-01 98.5% 50.7%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.22e-01 100.0% 52.2%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 44.0 3.97e-01 98.5% 90.7%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.81e-01 100.0% 95.6%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.75e-01 97.1% 42.0%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.51 40.0 3.66e-01 89.7% 69.1%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.51 40.0 3.10e-01 88.2% 60.1%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.65e-01 89.7% 21.9%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 37.0 3.56e-01 92.6% 67.5%
3gasA01 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.50 42.0 4.07e-01 97.1% 91.1%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 2.60e-01 98.5% 33.2%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1412633 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 45.0 4.86e-01 72.1% 70.7%
4331473 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.75 48.0 4.54e-01 100.0% 55.0%
3475462 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.74 53.0 4.97e-01 100.0% 61.2%
4995901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 46.0 4.99e-01 100.0% 78.2%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.50e-01 100.0% 88.9%
4998726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 45.0 4.30e-01 100.0% 53.8%
4169657 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 46.0 5.20e-01 100.0% 88.0%
4253206 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.71 61.0 5.59e-01 100.0% 73.3%
4675879 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 61.0 4.05e-01 100.0% 24.2%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.50e-01 100.0% 73.3%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.70 51.0 5.04e-01 100.0% 72.2%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.35e-01 100.0% 88.3%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.04e-01 100.0% 85.5%
3737903 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.69 45.0 4.88e-01 92.6% 81.8%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 4.67e-01 100.0% 70.8%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 46.0 4.59e-01 100.0% 67.1%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.68 42.0 3.95e-01 100.0% 50.6%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 46.0 4.74e-01 100.0% 73.8%
3589954 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 55.0 5.39e-01 100.0% 84.0%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.67 46.0 4.52e-01 100.0% 65.3%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 43.0 4.90e-01 95.6% 92.0%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.49e-01 100.0% 72.3%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 47.0 4.56e-01 100.0% 68.0%
3972041 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.66 52.0 3.91e-01 100.0% 36.3%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.16e-01 100.0% 84.0%
3475240 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.65 45.0 4.93e-01 95.6% 89.1%
3173941 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.03e-01 100.0% 50.0%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.65 46.0 4.50e-01 100.0% 68.0%
5065570 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 55.0 5.16e-01 100.0% 77.6%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.52e-01 95.6% 73.8%
3609527 2006.1.1.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.64 42.0 2.97e-01 95.6% 21.4%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.64 46.0 4.90e-01 100.0% 86.7%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.66e-01 100.0% 72.0%
3216433 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 38.0 4.57e-01 88.2% 100.0%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.64 46.0 4.84e-01 100.0% 86.7%
4882420 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 40.0 4.51e-01 97.1% 86.3%
4862202 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 40.0 4.53e-01 97.1% 89.8%
4977576 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.63 56.0 3.98e-01 100.0% 35.1%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 43.0 4.40e-01 100.0% 75.4%
3719595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.86e-01 100.0% 88.3%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 45.0 4.38e-01 100.0% 69.3%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.62 46.0 4.52e-01 100.0% 72.0%
3406663 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 43.0 4.70e-01 89.7% 100.0%
4187800 4.1.1.39 ↗ beta barrels › SH3 › SH3 › SH3 › SHD1 0.61 39.0 4.12e-01 100.0% 75.0%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 47.0 4.92e-01 100.0% 96.7%
3283266 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.60 35.0 3.57e-01 88.2% 58.5%
3620554 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 3.91e-01 100.0% 54.7%
4978411 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.60 54.0 3.94e-01 100.0% 40.0%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 50.0 4.88e-01 100.0% 84.0%
3880325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 45.0 4.48e-01 95.6% 78.6%
4302391 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.60 44.0 4.55e-01 98.5% 84.6%
1144780 219.1.1.69 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.60 47.0 3.84e-01 100.0% 46.8%
3725260 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 45.0 4.55e-01 98.5% 81.4%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 38.0 3.80e-01 98.5% 62.0%
3290750 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.59 50.0 3.96e-01 94.1% 50.7%
4346242 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.59 52.0 3.89e-01 100.0% 39.4%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 46.0 4.61e-01 100.0% 84.3%
5073781 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.59 52.0 3.76e-01 100.0% 40.0%
4091533 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.59 51.0 5.08e-01 100.0% 94.3%
3361883 1205.2.1.1 ↗ a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.59 42.0 3.85e-01 77.9% 97.9%
5023761 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 4.04e-01 72.1% 91.4%
3213114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 48.0 4.46e-01 100.0% 71.1%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 45.0 4.41e-01 100.0% 77.3%
3483375 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.69e-01 100.0% 85.3%
3883895 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 47.0 4.27e-01 100.0% 64.0%
5644 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.58 38.0 4.06e-01 91.2% 82.1%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.11e-01 100.0% 85.8%
4041551 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 42.0 3.66e-01 88.2% 95.8%
4017541 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.55 46.0 2.92e-01 98.5% 27.8%
4241631 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 46.0 3.42e-01 98.5% 54.4%
3291632 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 45.0 2.81e-01 98.5% 23.9%
3690378 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 44.0 3.08e-01 98.5% 39.6%
None — 0.53 43.0 2.80e-01 94.1% 41.4%
3549024 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 44.0 2.77e-01 98.5% 35.2%
3290242 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 42.0 2.82e-01 97.1% 37.7%
1269916 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 42.0 3.73e-01 97.1% 93.8%
4066093 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.52 42.0 2.85e-01 97.1% 41.0%
3589758 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 42.0 3.29e-01 97.1% 50.3%
4945513 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 39.0 2.88e-01 88.2% 28.3%
3924808 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.52 44.0 4.22e-01 95.6% 91.3%
4185536 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.50 41.0 2.49e-01 94.1% 29.5%
D2 high residues 88-159
PDB
D3 high residues 172-266
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.60 39.0 3.64e-01 81.1% 51.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 43.0 3.46e-01 100.0% 39.0%
4rctA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.58 45.0 3.65e-01 83.2% 74.1%
1ulvA04 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 3.70e-01 95.8% 98.8%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 31.0 3.40e-01 82.1% 66.7%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 47.0 3.60e-01 96.8% 47.1%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 38.0 3.63e-01 78.9% 71.1%
5lohB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.94e-01 96.8% 93.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969999 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 46.0 4.03e-01 91.6% 88.3%
1383 11.1.1.133 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glucodextran_C 0.54 46.0 3.47e-01 95.8% 98.0%
5040161 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.58e-01 98.9% 86.0%
3255982 868.1.1.5 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.54 41.0 3.18e-01 92.6% 38.0%
3348604 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 43.0 3.71e-01 92.6% 96.9%
3237895 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 39.0 2.61e-01 78.9% 88.2%
5022888 298.2.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.50 45.0 3.61e-01 98.9% 78.9%