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NC_025470.1__YP_009104127.1__S140_129__00126
Bact-VirNC_025470.1__YP_009104127.1__S140_129__00126
Identity
- Accession:
- NC_025470 ↗
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-88
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gewA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.75 | 46.0 | 4.53e-01 | 71.2% | 58.4% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.71 | 48.0 | 5.05e-01 | 74.0% | 77.3% |
| 5jfqB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.70 | 58.0 | 3.83e-01 | 91.8% | 90.2% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 46.0 | 4.64e-01 | 75.3% | 72.6% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 42.0 | 4.60e-01 | 71.2% | 84.2% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.64 | 45.0 | 4.65e-01 | 75.3% | 97.1% |
| 2gbbB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.62 | 49.0 | 3.87e-01 | 86.3% | 73.5% |
| 6cnzF00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.61 | 49.0 | 3.79e-01 | 86.3% | 75.9% |
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.61 | 44.0 | 3.94e-01 | 76.7% | 92.4% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.61 | 50.0 | 4.51e-01 | 97.3% | 99.1% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 49.0 | 4.38e-01 | 94.5% | 95.5% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.60 | 46.0 | 3.49e-01 | 84.9% | 45.6% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 41.0 | 4.36e-01 | 71.2% | 93.8% |
| 2g80A02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.59 | 41.0 | 4.03e-01 | 72.6% | 84.6% |
| 2p8tA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 4.03e-01 | 71.2% | 77.3% |
| 3idwA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.56 | 36.0 | 3.81e-01 | 82.2% | 72.7% |
| 3qybA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.55 | 45.0 | 3.76e-01 | 91.8% | 76.5% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.54 | 41.0 | 3.32e-01 | 83.6% | 50.3% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.54 | 38.0 | 3.39e-01 | 75.3% | 80.9% |
| 3hjeA03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.54 | 39.0 | 3.72e-01 | 80.8% | 63.7% |
| 4qqwA01 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.54 | 43.0 | 3.02e-01 | 87.7% | 78.9% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 37.0 | 3.25e-01 | 72.6% | 73.3% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.54 | 37.0 | 3.47e-01 | 71.2% | 85.7% |
| 4gytA00 | 1.20.120.740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 | 0.52 | 44.0 | 3.39e-01 | 97.3% | 79.1% |
| 3hzjA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.50 | 40.0 | 3.29e-01 | 91.8% | 68.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3501828 | 103.1.1.84 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 | 0.70 | 44.0 | 5.20e-01 | 80.8% | 94.0% |
| 3873737 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.67 | 47.0 | 5.14e-01 | 90.4% | 91.7% |
| 4034109 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.66 | 44.0 | 4.67e-01 | 72.6% | 78.5% |
| 3515200 | 102.1.1.34 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_4 | 0.64 | 45.0 | 4.47e-01 | 72.6% | 98.7% |
| 3251825 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.64 | 46.0 | 4.99e-01 | 90.4% | 91.7% |
| 5046406 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 52.0 | 3.62e-01 | 90.4% | 62.4% |
| 1723211 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 45.0 | 4.25e-01 | 79.5% | 64.8% |
| 1719150 | 3238.2.1.0 ↗ | alpha superhelices › Mitochondrial mTERF-like › Transcription activator-like effector (TALE) › Transcription activator-like effector (TALE) | 0.60 | 46.0 | 2.97e-01 | 83.6% | 22.6% |
| 4629851 | 103.5.1.2 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm | 0.60 | 41.0 | 4.10e-01 | 71.2% | 80.0% |
| 3559333 | 102.1.1.34 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_4 | 0.59 | 45.0 | 4.36e-01 | 83.6% | 90.6% |
| 3729778 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.59 | 37.0 | 3.96e-01 | 79.5% | 76.7% |
| 4979981 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.58 | 40.0 | 3.51e-01 | 71.2% | 94.5% |
| 4984327 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.57 | 40.0 | 3.54e-01 | 72.6% | 98.1% |
| 138267 | 102.1.1.34 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_4 | 0.56 | 36.0 | 3.81e-01 | 82.2% | 72.7% |
| 3926114 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.56 | 46.0 | 3.37e-01 | 98.6% | 65.5% |
| 4955514 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 38.0 | 3.66e-01 | 75.3% | 63.3% |
| 4424242 | 102.1.1.34 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_4 | 0.54 | 48.0 | 4.25e-01 | 98.6% | 70.5% |