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NC_025470.1__YP_009104164.1__S140_166__00163
Bact-VirNC_025470.1__YP_009104164.1__S140_166__00163
Identity
- Accession:
- NC_025470 ↗
- Kingdom:
- phage
Quality
60.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 139-232
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 61.0 | 6.24e-01 | 100.0% | 91.0% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 61.0 | 6.16e-01 | 100.0% | 96.7% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 55.0 | 5.84e-01 | 96.8% | 97.6% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 60.0 | 5.68e-01 | 100.0% | 83.5% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.64 | 48.0 | 4.69e-01 | 100.0% | 71.7% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.64 | 50.0 | 4.57e-01 | 100.0% | 64.8% |
| 5lwxA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 46.0 | 3.58e-01 | 80.9% | 73.4% |
| 3v9eA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.60 | 45.0 | 3.63e-01 | 80.9% | 76.0% |
| 5lwxA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.60 | 45.0 | 3.91e-01 | 80.9% | 77.2% |
| 6z0jA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 47.0 | 4.36e-01 | 86.2% | 79.3% |
| 4f7kA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 44.0 | 4.03e-01 | 78.7% | 92.8% |
| 4f7kA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 45.0 | 4.23e-01 | 87.2% | 66.7% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 4.36e-01 | 88.3% | 91.5% |
| 1id2A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 43.0 | 4.17e-01 | 79.8% | 76.4% |
| 7wguB01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 39.0 | 3.96e-01 | 86.2% | 71.4% |
| 7d73E01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 43.0 | 3.27e-01 | 78.7% | 88.9% |
| 1sddB02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 45.0 | 4.15e-01 | 87.2% | 76.8% |
| 6voxA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 45.0 | 4.31e-01 | 87.2% | 85.7% |
| 1nv8A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 42.0 | 3.38e-01 | 83.0% | 80.2% |
| 4bxsV03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 44.0 | 3.03e-01 | 87.2% | 38.8% |
| 3m7aA01 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.55 | 45.0 | 4.05e-01 | 92.6% | 80.9% |
| 2wpgA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 40.0 | 4.41e-01 | 87.2% | 98.7% |
| 3wdhA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 41.0 | 4.32e-01 | 86.2% | 91.7% |
| 3ou2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 43.0 | 3.42e-01 | 87.2% | 77.5% |
| 4f7kA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 43.0 | 3.79e-01 | 87.2% | 72.5% |
| 5eo9B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.83e-01 | 100.0% | 74.7% |
| 3kl0D01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 43.0 | 4.20e-01 | 92.6% | 100.0% |
| 2e4tA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 43.0 | 4.04e-01 | 93.6% | 97.5% |
| 3clwC01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 44.0 | 4.32e-01 | 93.6% | 100.0% |
| 2wskA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 39.0 | 4.10e-01 | 93.6% | 90.6% |
| 5zl1A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 45.0 | 3.17e-01 | 97.9% | 88.2% |
| 2xfdA00 | 2.60.60.40 | Mainly Beta › Sandwich › Lipoxygenase-1 › | 0.51 | 43.0 | 4.14e-01 | 95.7% | 92.7% |
| 1vhsA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.42e-01 | 88.3% | 97.0% |
| 5e1qB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 43.0 | 3.19e-01 | 97.9% | 91.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.74 | 61.0 | 6.33e-01 | 100.0% | 94.3% |
| 3958103 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.67 | 45.0 | 5.23e-01 | 76.6% | 100.0% |
| 3634665 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.62 | 54.0 | 4.57e-01 | 96.8% | 89.7% |
| 5039918 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.62 | 52.0 | 4.61e-01 | 94.7% | 95.0% |
| 5054542 | 4081.1.1.12 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 | 0.59 | 44.0 | 3.70e-01 | 79.8% | 97.1% |
| 3192481 | 12.6.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C | 0.57 | 49.0 | 4.78e-01 | 93.6% | 99.0% |
| 4952117 | 3156.1.1.3 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind | 0.57 | 41.0 | 4.11e-01 | 87.2% | 74.7% |
| 5050762 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 45.0 | 4.23e-01 | 88.3% | 90.0% |
| 3185872 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.56 | 45.0 | 3.43e-01 | 87.2% | 57.3% |
| 3733370 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.55 | 44.0 | 3.45e-01 | 87.2% | 59.1% |
| 4094534 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.54 | 40.0 | 3.28e-01 | 80.9% | 78.0% |
| 4877319 | 10.12.1.27 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 | 0.54 | 35.0 | 3.74e-01 | 92.6% | 75.6% |
| 169884 | 3156.1.1.3 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind | 0.54 | 44.0 | 4.25e-01 | 94.7% | 79.2% |
| 3904645 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 45.0 | 4.35e-01 | 92.6% | 88.6% |
| 3563799 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.56e-01 | 97.9% | 65.0% |
| 5012067 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.53 | 43.0 | 3.50e-01 | 87.2% | 53.7% |
| 4944509 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.62e-01 | 70.2% | 90.5% |
| 4282202 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.52 | 43.0 | 4.06e-01 | 94.7% | 98.3% |
| 4663567 | 207.6.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation | 0.52 | 40.0 | 2.48e-01 | 84.0% | 15.9% |
| 3365160 | 3156.1.1.20 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase, Cu-oxidase_2, Cu-oxidase_3 | 0.51 | 45.0 | 3.07e-01 | 97.9% | 30.3% |
| 4003735 | 7516.1.1.52 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotid_trans | 0.51 | 46.0 | 3.16e-01 | 100.0% | 58.7% |
| 4547930 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.51 | 43.0 | 4.08e-01 | 96.8% | 98.3% |
| 3970807 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 43.0 | 3.93e-01 | 98.9% | 71.2% |
| 4982160 | 207.7.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG | 0.51 | 41.0 | 3.29e-01 | 90.4% | 74.5% |
| 4870701 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.51 | 44.0 | 4.29e-01 | 97.9% | 93.2% |
D2
medium
residues 49-128