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NC_025470.1__YP_009104175.1__S140_177__00174

Bact-Vir

NC_025470.1__YP_009104175.1__S140_177__00174

Identity

Accession:
NC_025470 ↗
Kingdom:
phage

Quality

45.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-192
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27114.1 best Phage_tail_beta 44.4 2.50e-11 48.0% 80.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2491358 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.70 64.0 4.60e-01 94.4% 47.7%
2409669 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.68 60.0 4.61e-01 92.2% 44.1%
5040919 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 25.0 2.79e-01 73.2% 52.1%
3739780 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.51 42.0 3.07e-01 86.6% 72.2%
4237962 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 41.0 3.07e-01 86.6% 68.9%
D2 medium residues 217-276_291-318
PDB
D3 medium residues 319-513
PDB
D4 medium residues 717-788
PDB