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NC_025824.1__YP_009111298.1__QLX25_gp02__00002

Bact-Vir

NC_025824.1__YP_009111298.1__QLX25_gp02__00002

Identity

Accession:
NC_025824 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Loebvirae› Hofneiviricota› Faserviricetes› Tubulavirales› Inoviridae› Inovirus› Escherichia_phage_fd

TaxID: 2847073

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-76
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05155.21 best G2P_X_C 67.9 1.30e-18 80.3% 63.6%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 56.0 3.52e-01 98.6% 60.7%
7dukB01 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 40.0 4.74e-01 70.4% 100.0%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 40.0 4.68e-01 71.8% 100.0%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 50.0 4.12e-01 100.0% 75.5%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.57 35.0 4.22e-01 71.8% 95.7%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 41.0 3.42e-01 78.9% 63.1%
3p5pA02 1.50.10.160 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 44.0 3.19e-01 90.1% 31.7%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 40.0 2.60e-01 78.9% 23.8%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.53 39.0 3.82e-01 100.0% 72.0%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.52 36.0 2.94e-01 71.8% 53.6%
4byfC01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 38.0 3.59e-01 81.7% 64.0%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.52 35.0 3.20e-01 70.4% 88.7%
1z8sA02 6.10.140.360 Special › Helix non-globular › Helix Hairpins › 0.51 29.0 3.50e-01 87.3% 95.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.50 40.0 3.75e-01 84.5% 90.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3376851 2007.6.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.59 44.0 3.52e-01 78.9% 43.6%
3343807 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 48.0 4.60e-01 93.0% 85.9%
5042767 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.35e-01 94.4% 67.3%
4362429 2007.6.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.58 42.0 2.92e-01 78.9% 23.5%
1296342 101.1.2.456 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_MmpR5 0.56 48.0 3.79e-01 94.4% 49.7%
4234614 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.56 46.0 3.62e-01 97.2% 77.1%
3201554 150.1.1.98 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint 0.56 41.0 3.54e-01 80.3% 77.5%
4469646 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.55 41.0 2.68e-01 80.3% 26.2%
3007060 3003.1.1.1 ↗ a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N 0.53 39.0 3.30e-01 77.5% 94.3%
3196146 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.61e-01 93.0% 73.8%
3959944 3826.1.1.95 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RNA_pol_Rpb1_1 0.53 39.0 3.57e-01 100.0% 58.9%
4459981 2007.6.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.52 43.0 3.12e-01 100.0% 88.6%
3547209 192.15.1.204 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF2678 0.51 41.0 3.70e-01 88.7% 71.0%
3175614 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 2.82e-01 100.0% 34.7%
5058148 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.50 36.0 3.29e-01 88.7% 55.0%