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NC_025830.1__YP_009111137.1__Av05_0063__00063

Bact-Vir

NC_025830.1__YP_009111137.1__Av05_0063__00063

Identity

Accession:
NC_025830 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-67
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23835.2 best DUF7205 40.7 2.70e-10 100.0% 79.0%
D2 medium residues 77-117
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.93 79.0 5.15e-01 92.7% 24.4%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.88 79.0 5.50e-01 100.0% 68.3%
2h1jA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.86 76.0 4.19e-01 100.0% 7.3%
6igxD01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.83 67.0 4.07e-01 100.0% 14.5%
3no6A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.83 66.0 4.08e-01 92.7% 15.7%
3oo3A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.82 70.0 4.05e-01 100.0% 11.3%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.81 68.0 5.45e-01 100.0% 47.7%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.81 67.0 4.90e-01 97.6% 64.1%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.81 70.0 4.95e-01 100.0% 33.3%
3ea5D00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.80 66.0 3.53e-01 100.0% 4.6%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 71.0 5.83e-01 100.0% 57.5%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 66.0 4.53e-01 97.6% 28.0%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.79 54.0 3.57e-01 73.2% 18.1%
2py5A04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.79 62.0 6.54e-01 92.7% 100.0%
3dboB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.79 63.0 4.42e-01 90.2% 42.9%
4qflA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.79 67.0 4.14e-01 95.1% 17.8%
1vf6C00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.78 66.0 6.23e-01 97.6% 78.4%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.78 60.0 4.41e-01 97.6% 32.1%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 64.0 4.18e-01 97.6% 74.9%
4htpB00 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.77 62.0 3.94e-01 95.1% 18.5%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 65.0 5.14e-01 97.6% 47.0%
6epyA01 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.77 66.0 4.02e-01 100.0% 16.4%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.76 63.0 5.71e-01 97.6% 67.8%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.76 61.0 5.87e-01 92.7% 100.0%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.76 64.0 4.56e-01 100.0% 31.3%
4hkaA02 1.10.287.3810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 62.0 5.90e-01 100.0% 78.4%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 65.0 4.50e-01 100.0% 32.6%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.74 57.0 3.99e-01 90.2% 25.7%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.74 60.0 5.94e-01 97.6% 88.6%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.74 62.0 4.54e-01 100.0% 34.7%
6z01B03 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.74 64.0 4.32e-01 100.0% 27.9%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.74 58.0 3.87e-01 95.1% 21.7%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 58.0 4.95e-01 97.6% 54.7%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.73 57.0 3.68e-01 90.2% 44.7%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 59.0 4.15e-01 100.0% 29.2%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 58.0 5.17e-01 100.0% 93.5%
4gytA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.69 57.0 3.78e-01 97.6% 26.6%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 54.0 3.47e-01 95.1% 49.1%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.68 52.0 4.51e-01 92.7% 57.5%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 57.0 3.95e-01 100.0% 70.0%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.64 54.0 3.62e-01 100.0% 82.6%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 53.0 3.80e-01 100.0% 70.1%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.63 52.0 3.78e-01 100.0% 65.4%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 47.0 3.92e-01 90.2% 44.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3723226 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.91 77.0 5.20e-01 92.7% 28.1%
4672676 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.91 82.0 5.50e-01 100.0% 39.3%
3548030 548.1.1.1 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.90 71.0 6.62e-01 87.8% 70.0%
3791242 3729.1.1.1 alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain › Legum_prodom 0.89 81.0 5.33e-01 100.0% 27.3%
3824631 109.4.1.2306 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25999 0.86 76.0 4.55e-01 100.0% 16.0%
3992031 548.1.1.0 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain 0.85 68.0 6.36e-01 92.7% 72.0%
4095475 377.1.1.2 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 0.84 66.0 4.97e-01 92.7% 36.8%
4025175 397.7.1.0 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.84 69.0 7.00e-01 97.6% 95.0%
3311490 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.83 73.0 5.75e-01 100.0% 48.2%
3492075 3729.1.1.1 alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain › Legum_prodom 0.83 73.0 5.16e-01 100.0% 33.1%
4102849 507.1.1.0 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related 0.83 70.0 4.98e-01 97.6% 80.8%
3692552 5071.3.1.0 alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 0.82 74.0 6.27e-01 100.0% 64.6%
3512421 109.4.1.871 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_R4 0.82 68.0 4.76e-01 92.7% 30.4%
3415759 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.82 70.0 5.59e-01 100.0% 48.2%
4099493 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.82 69.0 5.36e-01 100.0% 43.2%
4127368 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.81 73.0 6.83e-01 100.0% 86.0%
3448515 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.81 64.0 6.25e-01 90.2% 84.4%
5000553 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.80 70.0 5.88e-01 100.0% 64.3%
4981193 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.80 70.0 4.27e-01 100.0% 17.3%
3716015 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.80 71.0 6.26e-01 100.0% 70.0%
5025209 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.80 68.0 4.24e-01 100.0% 26.0%
3976663 3812.1.1.1 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E 0.80 68.0 5.94e-01 100.0% 84.6%
3708624 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 71.0 3.86e-01 100.0% 6.1%
4573348 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.80 70.0 6.03e-01 100.0% 76.9%
3987389 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.79 69.0 3.87e-01 100.0% 8.3%
3974197 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 69.0 5.57e-01 100.0% 52.5%
5048061 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.79 69.0 6.28e-01 100.0% 81.8%
3743018 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.79 67.0 5.80e-01 97.6% 63.1%
3582652 4970.1.1.3 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2 0.79 68.0 5.34e-01 97.6% 47.1%
3581869 192.14.1.0 alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like 0.78 68.0 6.38e-01 100.0% 84.0%
3178088 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.78 59.0 3.63e-01 85.4% 14.0%
3602308 4095.1.1.1 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.78 63.0 4.60e-01 90.2% 33.6%
3595965 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 67.0 3.95e-01 100.0% 12.7%
5044956 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.77 66.0 4.68e-01 100.0% 37.7%
4403724 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.77 63.0 6.18e-01 92.7% 86.7%
3608478 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.77 67.0 6.53e-01 100.0% 91.1%
5081198 4244.1.1.0 a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like 0.77 64.0 4.19e-01 97.6% 22.3%
3289740 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.77 64.0 5.72e-01 97.6% 70.0%
4590991 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.76 66.0 6.29e-01 100.0% 87.5%
3961229 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.76 65.0 4.25e-01 100.0% 21.6%
3302917 2004.1.1.505 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 0.76 65.0 3.85e-01 100.0% 12.7%
3619577 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.76 64.0 5.07e-01 100.0% 46.7%
3720908 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.76 62.0 3.67e-01 92.7% 11.5%
3457988 192.14.1.1 alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like › Siah-Interact_N 0.75 64.0 6.30e-01 100.0% 93.3%
3990693 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.75 60.0 6.08e-01 90.2% 92.5%
4048210 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.75 62.0 6.13e-01 97.6% 93.3%
3783416 3730.1.1.0 alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain 0.74 61.0 5.69e-01 100.0% 74.1%
2161989 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.74 62.0 6.04e-01 100.0% 91.5%
3327326 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.74 56.0 3.11e-01 85.4% 5.7%
3648207 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.74 60.0 3.32e-01 92.7% 6.5%
4465242 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.73 64.0 6.25e-01 100.0% 93.3%
4351951 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.73 60.0 5.85e-01 92.7% 86.7%
3258520 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.73 60.0 5.92e-01 97.6% 86.7%
3485269 192.6.1.3 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATPD_C_metazoa 0.73 62.0 6.07e-01 100.0% 93.3%
3958 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.70 59.0 4.11e-01 100.0% 28.2%
3645380 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.68 52.0 3.44e-01 85.4% 18.9%
3352832 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.68 51.0 3.55e-01 85.4% 46.9%
3310405 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.68 53.0 3.37e-01 85.4% 16.3%
4089954 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.66 56.0 5.46e-01 100.0% 93.3%
3927675 2004.1.1.600 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 0.64 48.0 2.72e-01 92.7% 6.8%
4957831 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.64 49.0 3.48e-01 100.0% 25.5%