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NC_025830.1__YP_009111148.1__Av05_0074__00074

Bact-Vir

NC_025830.1__YP_009111148.1__Av05_0074__00074

Identity

Accession:
NC_025830 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Avunavirus› Escherichia_phage_Av-05

TaxID: 1527519

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-54
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.06e-01 84.9% 72.3%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 47.0 3.82e-01 75.5% 84.1%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 4.41e-01 92.5% 56.5%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 4.39e-01 86.8% 62.0%
8e7cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 49.0 4.29e-01 81.1% 100.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.36e-01 92.5% 89.3%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 45.0 3.74e-01 75.5% 80.8%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.68e-01 84.9% 64.7%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 3.60e-01 83.0% 97.5%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.71e-01 84.9% 74.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.28e-01 84.9% 93.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.72e-01 92.5% 87.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 45.0 2.88e-01 86.8% 37.9%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.10e-01 100.0% 85.3%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.98e-01 100.0% 74.8%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 47.0 3.76e-01 92.5% 60.5%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.58 48.0 3.35e-01 100.0% 63.4%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.57 45.0 4.44e-01 88.7% 82.8%
2p38A01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.67e-01 83.0% 84.4%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.56 39.0 3.53e-01 84.9% 52.0%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.57e-01 84.9% 80.9%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.14e-01 84.9% 63.1%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.55 40.0 3.74e-01 86.8% 61.6%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 44.0 3.34e-01 100.0% 36.5%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 43.0 3.48e-01 92.5% 67.2%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.51e-01 84.9% 75.8%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.54 42.0 3.89e-01 92.5% 89.6%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.54 40.0 3.20e-01 81.1% 56.0%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 37.0 3.87e-01 88.7% 80.9%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.21e-01 83.0% 91.4%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 2.91e-01 75.5% 90.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.14e-01 86.8% 93.8%
1mdbA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.53 36.0 3.35e-01 73.6% 93.4%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.31e-01 94.3% 82.9%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.43e-01 83.0% 88.5%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 35.0 3.32e-01 75.5% 53.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.80e-01 86.8% 74.2%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.31e-01 84.9% 74.7%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.15e-01 88.7% 94.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 3.41e-01 100.0% 57.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.63e-01 100.0% 80.4%
2jh1A01 3.90.640.70 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.52 40.0 3.36e-01 94.3% 91.7%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 39.0 2.42e-01 92.5% 29.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 34.0 3.19e-01 77.4% 51.4%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.16e-01 94.3% 84.1%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 3.47e-01 79.2% 88.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 3.88e-01 98.1% 90.9%
2dx5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.17e-01 84.9% 81.8%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 39.0 3.23e-01 92.5% 63.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971733 11.9.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH 0.71 55.0 3.40e-01 84.9% 21.9%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 53.0 3.56e-01 92.5% 27.0%
3884178 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 52.0 4.76e-01 98.1% 88.0%
3989307 220.1.1.88 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF956 0.62 47.0 3.79e-01 84.9% 64.5%
4971791 10.17.1.1 ↗ beta sandwiches › jelly-roll › Acetamidase/Formamidase-like › Acetamidase/Formamidase-like › FmdA_AmdA 0.62 50.0 3.38e-01 94.3% 74.7%
3823929 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.61 47.0 3.63e-01 84.9% 56.7%
3669050 310.2.1.48 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › TMEM62_C 0.59 49.0 3.29e-01 100.0% 63.3%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.59 48.0 3.98e-01 98.1% 59.0%
3926899 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.66e-01 90.6% 64.5%
3374859 604.6.1.47 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › TMEM62_C 0.57 46.0 3.15e-01 100.0% 65.8%
5066751 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.57 47.0 2.96e-01 100.0% 25.6%
4952379 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 47.0 3.08e-01 100.0% 32.1%
3861490 220.1.1.118 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.56 41.0 3.51e-01 84.9% 80.0%
3980228 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 43.0 3.49e-01 94.3% 48.8%
4996887 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.55 46.0 3.01e-01 100.0% 31.6%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 45.0 3.35e-01 100.0% 89.7%
3990213 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 42.0 3.58e-01 90.6% 77.0%
None — 0.55 40.0 3.20e-01 84.9% 58.5%
3453256 1.1.5.68 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Nal1_C 0.55 44.0 2.77e-01 88.7% 85.1%
4832857 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.55 40.0 3.65e-01 86.8% 74.7%
3350469 604.1.1.164 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM62_C 0.55 43.0 3.02e-01 100.0% 67.2%
2265 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.55 45.0 3.34e-01 94.3% 47.7%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.55 40.0 3.49e-01 84.9% 76.8%
4960065 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.55 45.0 3.00e-01 100.0% 32.7%
5019383 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 43.0 3.93e-01 92.5% 70.7%
3940203 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.55 40.0 3.41e-01 84.9% 83.0%
3939076 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 40.0 3.41e-01 84.9% 70.0%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.54 40.0 3.73e-01 83.0% 70.0%
4383747 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 39.0 3.00e-01 84.9% 49.0%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 42.0 4.02e-01 92.5% 81.5%
3593624 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.54 44.0 3.13e-01 100.0% 79.9%
4571275 2003.1.7.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.54 38.0 2.67e-01 77.4% 42.1%
3919870 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 39.0 3.19e-01 84.9% 62.5%
3909375 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 39.0 3.10e-01 84.9% 56.3%
3940847 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 38.0 3.22e-01 84.9% 65.5%
3610629 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 43.0 3.09e-01 100.0% 42.6%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.53 40.0 3.89e-01 92.5% 87.7%
3254948 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 42.0 2.99e-01 100.0% 86.5%
3719195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.72e-01 98.1% 32.6%
3389671 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 41.0 3.03e-01 100.0% 73.2%
3273863 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.52 38.0 3.28e-01 84.9% 79.0%
3340540 1.1.17.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Nal1_C 0.52 40.0 2.69e-01 92.5% 41.8%
5028450 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.52 34.0 3.22e-01 73.6% 51.4%
3427234 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 43.0 2.88e-01 100.0% 42.0%
3743622 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 39.0 2.17e-01 84.9% 17.8%
3911662 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 41.0 2.92e-01 100.0% 70.2%
3717006 206.1.1.66 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › CLU 0.51 36.0 2.24e-01 75.5% 67.0%
3848155 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 40.0 2.87e-01 100.0% 75.2%
3886244 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 40.0 2.89e-01 100.0% 74.5%
D2 medium residues 59-101
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.81 71.0 5.18e-01 100.0% 37.4%
1nrkA03 2.40.30.160 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.79 68.0 4.94e-01 100.0% 39.3%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.78 65.0 4.93e-01 100.0% 44.6%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.77 58.0 4.33e-01 86.0% 32.7%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 53.0 4.92e-01 81.4% 60.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 53.0 4.50e-01 81.4% 49.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.64e-01 86.0% 56.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.50e-01 86.0% 59.4%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 47.0 3.35e-01 79.1% 24.6%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.65 52.0 4.26e-01 100.0% 44.7%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 46.0 3.34e-01 81.4% 32.4%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 49.0 4.52e-01 100.0% 77.6%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 52.0 3.26e-01 100.0% 17.1%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 47.0 4.06e-01 83.7% 54.3%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 48.0 3.92e-01 100.0% 95.0%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.61 50.0 3.26e-01 100.0% 21.0%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.61 52.0 4.74e-01 95.3% 76.8%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 47.0 3.60e-01 100.0% 40.8%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 47.0 3.29e-01 100.0% 42.7%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 50.0 3.01e-01 97.7% 43.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 45.0 3.91e-01 100.0% 58.2%
3r5tA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 40.0 3.11e-01 79.1% 97.4%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 45.0 3.73e-01 100.0% 96.8%
4ku0D00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 42.0 3.33e-01 81.4% 42.7%
1tjyA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 47.0 3.21e-01 97.7% 36.8%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 47.0 3.37e-01 100.0% 84.6%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 47.0 3.53e-01 100.0% 80.2%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 42.0 3.22e-01 100.0% 43.7%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 3.87e-01 100.0% 55.3%
5lszA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.55 44.0 2.85e-01 95.3% 42.0%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.47e-01 100.0% 36.4%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 2.97e-01 76.7% 85.6%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.51e-01 100.0% 66.0%
2hq4A00 3.40.1600.10 Alpha Beta › 3-Layer(aba) Sandwich › PH1570-like fold › PH1570-like 0.53 39.0 2.78e-01 83.7% 24.7%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 42.0 3.17e-01 100.0% 38.1%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 40.0 3.15e-01 100.0% 39.2%
1c4kA04 3.90.100.10 Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain 0.52 43.0 3.16e-01 100.0% 60.5%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.11e-01 100.0% 66.2%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.31e-01 100.0% 67.0%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.51 41.0 3.81e-01 100.0% 73.8%
2cnzA00 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.51 41.0 3.14e-01 100.0% 57.7%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.51 42.0 2.78e-01 100.0% 61.0%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 2.98e-01 100.0% 83.4%
1x6cA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.10e-01 95.3% 40.7%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 41.0 2.72e-01 100.0% 19.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384073 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.80 69.0 5.00e-01 100.0% 50.0%
4328171 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.79 69.0 4.27e-01 100.0% 29.4%
4954563 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 67.0 5.45e-01 100.0% 60.0%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 57.0 5.00e-01 88.4% 54.0%
3473588 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 62.0 4.92e-01 100.0% 55.8%
3009261 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.73 66.0 4.79e-01 100.0% 68.8%
3591034 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.73 62.0 4.85e-01 97.7% 85.3%
4962327 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.73 64.0 5.94e-01 100.0% 80.0%
3513458 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.72 64.0 4.18e-01 100.0% 41.6%
3512135 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.72 64.0 5.02e-01 100.0% 63.3%
5041607 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 59.0 5.07e-01 100.0% 56.8%
5040460 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.72 63.0 5.25e-01 100.0% 62.2%
4061290 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.71 63.0 5.28e-01 100.0% 75.3%
3989463 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.71 62.0 4.96e-01 100.0% 96.5%
5035997 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 60.0 5.17e-01 100.0% 60.0%
5077063 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.70 57.0 4.90e-01 100.0% 56.0%
3282745 1.1.12.0 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins 0.69 61.0 4.39e-01 100.0% 41.7%
4129680 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.69 58.0 4.40e-01 100.0% 51.8%
4913414 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.68 57.0 4.34e-01 100.0% 42.5%
4987864 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 53.0 4.55e-01 100.0% 56.0%
2323978 1186.1.1.0 ↗ 0.65 44.0 3.80e-01 74.4% 62.3%
4959715 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 45.0 2.66e-01 76.7% 18.7%
3677429 1.1.7.67 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Trypsin_2 0.64 52.0 4.22e-01 100.0% 49.5%
4048207 6012.1.1.0 ↗ few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI 0.63 50.0 5.06e-01 100.0% 95.3%
3642430 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.63 51.0 4.14e-01 100.0% 49.5%
4328639 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.63 50.0 4.10e-01 100.0% 58.9%
1557343 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.62 47.0 4.06e-01 83.7% 54.3%
3948150 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.62 47.0 3.93e-01 86.0% 82.5%
4015499 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.61 48.0 3.17e-01 100.0% 75.5%
4218835 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 48.0 3.91e-01 100.0% 58.9%
78 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.60 47.0 3.60e-01 100.0% 40.8%
4274453 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 47.0 3.99e-01 100.0% 58.8%
4224084 2007.1.2.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.59 50.0 3.29e-01 97.7% 32.6%
4317931 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 47.0 3.98e-01 100.0% 63.5%
4664980 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.59 50.0 3.26e-01 97.7% 32.8%
4342941 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 45.0 3.92e-01 100.0% 61.2%
4938361 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 48.0 3.43e-01 100.0% 64.3%
4952193 223.1.1.49 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HK-GC-Chemotax_sensor 0.56 44.0 2.87e-01 100.0% 30.8%
4008273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 3.71e-01 88.4% 65.7%
3264091 11.1.1.1038 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SIBA-E_N, Ig_SIBA-E_2nd 0.55 43.0 2.89e-01 100.0% 24.4%
4951354 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 46.0 3.48e-01 100.0% 80.0%
5038846 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 46.0 3.32e-01 100.0% 65.0%
3283803 223.1.1.36 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD 0.55 45.0 3.11e-01 100.0% 78.9%
3271628 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.54 44.0 3.39e-01 100.0% 76.5%
4222630 244.1.1.12 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Smoa_sbd 0.53 37.0 2.97e-01 81.4% 59.1%
5053568 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.10e-01 100.0% 51.9%
3239313 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 42.0 2.62e-01 97.7% 18.1%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.52 42.0 3.35e-01 100.0% 64.8%
3974170 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.20e-01 93.0% 79.0%
3782159 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 41.0 3.30e-01 93.0% 94.7%
3710311 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 41.0 3.12e-01 100.0% 98.5%
4961911 2487.1.1.9 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.51 38.0 2.69e-01 100.0% 96.1%
4849749 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.50 42.0 3.61e-01 100.0% 70.7%
3366352 1.1.11.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.50 38.0 3.28e-01 100.0% 78.9%