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NC_025830.1__YP_009111233.1__Av05_00159__00159

Bact-Vir

NC_025830.1__YP_009111233.1__Av05_00159__00159

Identity

Accession:
NC_025830 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Avunavirus› Escherichia_phage_Av-05

TaxID: 1527519

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-64
PDB
Domain cluster: rep: OP617741.1__UYL04450.1__EPNKCIFM_00148__00129__D44-98
D2 high residues 67-137
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z2nX03 3.30.1490.220 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.61 44.0 3.88e-01 77.5% 56.6%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.58 36.0 3.57e-01 88.7% 59.5%
1c9fA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 39.0 3.76e-01 77.5% 71.3%
2pf5D00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 44.0 4.02e-01 90.1% 83.3%
7sbiA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 39.0 3.93e-01 76.1% 92.9%
6tmfJ02 3.30.1490.10 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 39.0 4.14e-01 78.9% 95.1%
3o4oC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.21e-01 70.4% 71.0%
2zdjA00 3.10.450.450 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.74e-01 73.2% 97.1%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.65e-01 76.1% 87.8%
5k3xA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.28e-01 77.5% 71.7%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 37.0 3.42e-01 76.1% 89.6%
7ok5A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 2.93e-01 78.9% 47.7%
1xeeA01 3.10.20.390 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS 0.52 35.0 3.38e-01 70.4% 82.9%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.28e-01 76.1% 80.4%
8bxrA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 2.87e-01 78.9% 46.3%
1wjnA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 37.0 3.47e-01 83.1% 79.4%
1u2hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 2.94e-01 80.3% 47.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217021 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 46.0 3.79e-01 78.9% 77.6%
3435548 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.57 36.0 3.56e-01 97.2% 60.0%
4681298 304.24.1.16 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA 0.56 40.0 3.69e-01 78.9% 57.0%
3793350 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.55 32.0 3.21e-01 90.1% 54.7%
3924685 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.55 35.0 3.45e-01 93.0% 57.5%
4995368 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.55 41.0 3.43e-01 83.1% 58.5%
4599839 221.1.4.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like 0.55 39.0 3.88e-01 76.1% 86.7%
3165151 221.1.4.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › SLBB 0.55 39.0 3.78e-01 76.1% 81.2%
4947772 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.54 40.0 3.35e-01 80.3% 65.4%
3307369 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.54 35.0 3.44e-01 93.0% 61.3%
1103284 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 36.0 3.35e-01 70.4% 78.9%
4937833 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.54 42.0 3.29e-01 87.3% 55.6%
4192602 4988.1.1.1 ↗ a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal_S8 0.53 38.0 3.98e-01 78.9% 89.2%
3998609 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.53 36.0 3.88e-01 71.8% 100.0%
5017768 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.53 40.0 3.23e-01 84.5% 60.7%
3273150 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.52 36.0 3.31e-01 73.2% 83.0%
2512528 4988.1.1.0 ↗ a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain 0.52 38.0 4.00e-01 78.9% 92.1%
3642360 221.1.1.111 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.52 39.0 3.53e-01 83.1% 68.6%
5003337 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 40.0 3.20e-01 87.3% 57.5%
5018968 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 40.0 3.20e-01 85.9% 58.7%
4950356 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 40.0 3.29e-01 87.3% 62.1%
3599283 70.3.1.0 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like 0.51 31.0 2.57e-01 85.9% 29.0%
3508709 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.51 33.0 3.32e-01 93.0% 62.7%
3396202 312.1.1.8 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.51 37.0 2.97e-01 77.5% 90.0%
5047351 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.51 36.0 3.45e-01 78.9% 86.7%
3606623 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 35.0 3.56e-01 76.1% 88.6%
5043889 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.50 36.0 2.94e-01 80.3% 54.8%