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NC_026014.1__YP_009113047.1__SF19_gp04__00004
Bact-VirNC_026014.1__YP_009113047.1__SF19_gp04__00004
Identity
- Accession:
- NC_026014 ↗
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Taxonomy
TaxID: 1567486
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-106
Domain cluster:
rep: MK416015.1__QBP07923.1__X__00005__D9-66
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15958.10 best | DUF4761 | 158.5 | 7.00e-47 | 100.0% | 67.6% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nctA00 | 3.40.50.11880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein | 0.70 | 64.0 | 5.10e-01 | 100.0% | 65.7% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 53.0 | 4.34e-01 | 84.5% | 74.2% |
| 2f3xA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.68 | 51.0 | 4.14e-01 | 83.1% | 83.9% |
| 1f2uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 48.0 | 3.80e-01 | 81.7% | 85.2% |
| 5c98B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.62 | 47.0 | 3.80e-01 | 80.3% | 100.0% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.61 | 44.0 | 3.74e-01 | 76.1% | 72.5% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.61 | 47.0 | 3.10e-01 | 84.5% | 95.2% |
| 1a5yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 44.0 | 2.95e-01 | 77.5% | 44.7% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.61 | 50.0 | 4.15e-01 | 91.5% | 93.8% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 43.0 | 3.02e-01 | 73.2% | 40.2% |
| 3s27B01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 46.0 | 3.77e-01 | 83.1% | 64.7% |
| 2i7xA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 41.0 | 2.77e-01 | 73.2% | 44.4% |
| 1qqgA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 40.0 | 3.56e-01 | 70.4% | 80.6% |
| 4dzoA02 | 3.30.457.60 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.59 | 47.0 | 4.59e-01 | 87.3% | 90.9% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 47.0 | 4.35e-01 | 91.5% | 76.6% |
| 2xr1A03 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 41.0 | 2.78e-01 | 74.6% | 44.2% |
| 2o34A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.58 | 47.0 | 3.29e-01 | 91.5% | 98.0% |
| 4bubA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.58 | 48.0 | 3.47e-01 | 97.2% | 85.7% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 39.0 | 3.54e-01 | 71.8% | 80.8% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 44.0 | 4.14e-01 | 95.8% | 67.8% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.56 | 38.0 | 3.86e-01 | 70.4% | 82.9% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 40.0 | 2.78e-01 | 74.6% | 42.0% |
| 6wo0A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 40.0 | 2.87e-01 | 74.6% | 51.6% |
| 2jvnA00 | 3.90.640.80 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.56 | 34.0 | 2.88e-01 | 93.0% | 33.3% |
| 1vjnA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 39.0 | 2.90e-01 | 74.6% | 32.5% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 43.0 | 3.72e-01 | 84.5% | 79.8% |
| 5ahoA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 38.0 | 2.82e-01 | 74.6% | 49.7% |
| 3fruA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 42.0 | 3.18e-01 | 87.3% | 41.8% |
| 4kqdB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 36.0 | 3.18e-01 | 73.2% | 79.3% |
| 4i6xA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.72e-01 | 93.0% | 95.7% |
| 4o32C00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 4.06e-01 | 100.0% | 73.6% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.40e-01 | 80.3% | 87.2% |
| 2i7tA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 41.0 | 2.80e-01 | 87.3% | 58.8% |
| 1ha6A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 32.0 | 3.27e-01 | 78.9% | 61.4% |
| 4c1wA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 39.0 | 2.90e-01 | 81.7% | 77.1% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 43.0 | 3.52e-01 | 100.0% | 87.5% |
| 2zshA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 42.0 | 2.79e-01 | 97.2% | 81.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3831607 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.68 | 48.0 | 3.09e-01 | 73.2% | 41.0% |
| 3939443 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.67 | 57.0 | 4.96e-01 | 95.8% | 89.1% |
| 4106397 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 56.0 | 5.55e-01 | 94.4% | 89.3% |
| 3258441 | 234.3.1.0 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain | 0.65 | 46.0 | 4.59e-01 | 74.6% | 74.7% |
| 3802832 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.64 | 47.0 | 3.11e-01 | 80.3% | 42.5% |
| 3829679 | 5.1.4.224 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 | 0.63 | 44.0 | 2.78e-01 | 73.2% | 19.5% |
| 3266017 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 44.0 | 2.89e-01 | 73.2% | 22.3% |
| 3887886 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.62 | 46.0 | 3.19e-01 | 78.9% | 76.7% |
| 4538466 | 3197.1.1.1 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N | 0.62 | 45.0 | 3.71e-01 | 76.1% | 58.5% |
| 5019700 | 5090.1.1.6 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer | 0.62 | 50.0 | 4.52e-01 | 88.7% | 95.0% |
| 3755055 | 331.1.1.12 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 | 0.62 | 44.0 | 3.57e-01 | 74.6% | 85.9% |
| 4928697 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.61 | 53.0 | 4.36e-01 | 97.2% | 73.6% |
| 2812203 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.61 | 43.0 | 2.93e-01 | 74.6% | 54.6% |
| 5019517 | 5090.1.1.6 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer | 0.60 | 50.0 | 3.90e-01 | 91.5% | 90.3% |
| 3365981 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.60 | 42.0 | 3.03e-01 | 73.2% | 58.6% |
| 5019722 | 5090.1.1.6 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer | 0.60 | 49.0 | 3.80e-01 | 90.1% | 94.4% |
| 4955420 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.60 | 42.0 | 2.86e-01 | 74.6% | 76.1% |
| 3477288 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.60 | 42.0 | 2.78e-01 | 74.6% | 38.4% |
| 3393795 | 77.1.1.3 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 | 0.60 | 44.0 | 3.04e-01 | 80.3% | 33.5% |
| 3803349 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.60 | 42.0 | 2.73e-01 | 73.2% | 37.5% |
| 5003437 | 5090.1.1.6 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer | 0.59 | 50.0 | 3.93e-01 | 94.4% | 91.6% |
| 3251907 | 247.1.1.8 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL,Lactamase_B_6 | 0.59 | 42.0 | 2.73e-01 | 73.2% | 38.1% |
| 3474879 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.59 | 42.0 | 2.96e-01 | 74.6% | 52.9% |
| 3787856 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.59 | 42.0 | 2.68e-01 | 74.6% | 35.4% |
| 5081683 | 2002.3.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 | 0.58 | 47.0 | 2.94e-01 | 90.1% | 46.0% |
| 5051371 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.58 | 43.0 | 2.79e-01 | 78.9% | 69.5% |
| 3538630 | 77.3.1.5 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 | 0.58 | 43.0 | 2.89e-01 | 78.9% | 35.6% |
| 3877591 | 77.3.1.5 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 | 0.58 | 42.0 | 2.83e-01 | 77.5% | 34.0% |
| 1499068 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.57 | 41.0 | 2.98e-01 | 74.6% | 71.1% |
| 3607779 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.57 | 46.0 | 2.98e-01 | 88.7% | 64.2% |
| 3596706 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.57 | 46.0 | 2.97e-01 | 90.1% | 71.0% |
| 3274499 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 47.0 | 2.86e-01 | 93.0% | 47.8% |
| 2448269 | 247.1.1.2 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,RMMBL | 0.57 | 40.0 | 2.93e-01 | 74.6% | 56.0% |
| 4558296 | 77.1.1.3 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 | 0.57 | 42.0 | 2.85e-01 | 80.3% | 91.6% |
| 4977303 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.57 | 40.0 | 2.82e-01 | 74.6% | 45.3% |
| 5076188 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.57 | 40.0 | 2.75e-01 | 74.6% | 43.1% |
| 3631472 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.57 | 39.0 | 2.91e-01 | 73.2% | 37.0% |
| 4528719 | 4.1.1.438 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27440 | 0.56 | 39.0 | 4.04e-01 | 71.8% | 90.8% |
| 3743452 | 247.1.1.8 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL,Lactamase_B_6 | 0.56 | 40.0 | 2.64e-01 | 74.6% | 36.8% |
| 4028474 | 247.1.1.44 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_6 | 0.56 | 39.0 | 2.53e-01 | 74.6% | 46.0% |
| 5057641 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.55 | 39.0 | 2.72e-01 | 74.6% | 45.6% |
| 2555391 | 247.1.1.8 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL,Lactamase_B_6 | 0.55 | 39.0 | 2.82e-01 | 74.6% | 58.9% |
| 3412503 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.54 | 39.0 | 2.64e-01 | 78.9% | 46.1% |
| None | — | 0.53 | 39.0 | 2.61e-01 | 81.7% | 30.0% | |
| 2899809 | 7579.1.1.94 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Peptidase_S15 | 0.52 | 45.0 | 3.04e-01 | 100.0% | 76.5% |
| 3556658 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.51 | 32.0 | 3.22e-01 | 81.7% | 60.0% |
| 4929475 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.51 | 41.0 | 2.81e-01 | 87.3% | 89.0% |
| 4011732 | 5.1.4.446 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd, Beta-prop_WDR36-Utp21_1st | 0.51 | 41.0 | 2.38e-01 | 94.4% | 45.7% |
| 4982915 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.51 | 42.0 | 2.76e-01 | 90.1% | 72.3% |
| 3930705 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.51 | 43.0 | 3.95e-01 | 100.0% | 84.0% |
| 4458694 | 247.1.1.2 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,RMMBL | 0.51 | 40.0 | 2.80e-01 | 87.3% | 89.2% |