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NC_026590.1__YP_009124763.1__VC46_gp020__00020

Bact-Vir

NC_026590.1__YP_009124763.1__VC46_gp020__00020

Identity

Accession:
NC_026590 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gaiavirus› Mycobacterium_phage_Gaia

TaxID: 1486472

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 210-356
PDB
Domain cluster: rep: ON528933.2__USL85073.1__X__00047__D698-839
D2 medium residues 177-203
PDB
Domain cluster: representative
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3524695 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.56 40.0 3.91e-01 100.0% 100.0%
3789654 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 37.0 2.84e-01 96.3% 50.5%
3502944 927.1.1.0 ↗ few secondary structure elements › Elafin-like › Elafin-like › Elafin-like 0.52 39.0 3.60e-01 77.8% 70.0%
D3 medium residues 369-564
PDB
Domain cluster: rep: MW584195.1__QSM04178.1__PROPHIGD51-2_40__00040__D376-428_443-519_647-661
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21722.5 best Gly_rich_2 69.6 5.80e-19 93.4% 99.1%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 23.0 2.81e-01 97.4% 50.4%
7vt4A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.59 25.0 2.99e-01 99.5% 56.2%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 19.0 2.75e-01 94.4% 65.9%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 30.0 3.61e-01 97.4% 80.6%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.53 26.0 3.53e-01 99.0% 91.8%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 31.0 3.38e-01 96.4% 68.5%
1omiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 22.0 2.85e-01 97.4% 66.7%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 21.0 2.97e-01 97.4% 78.4%
3w5nA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 30.0 3.28e-01 96.9% 67.7%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 32.0 3.55e-01 97.4% 80.4%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.50 25.0 3.06e-01 98.0% 71.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928383 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 29.0 4.19e-01 96.9% 98.9%
3231883 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 27.0 3.61e-01 98.5% 78.1%
4929792 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 25.0 3.37e-01 97.4% 73.0%
4623622 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 28.0 3.89e-01 97.4% 92.6%
5077191 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 31.0 4.21e-01 95.9% 100.0%
3919527 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 29.0 3.96e-01 95.9% 92.4%
5055086 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 24.0 3.34e-01 89.8% 78.9%
4948691 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 30.0 4.02e-01 97.4% 100.0%
3231884 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 30.0 3.62e-01 98.0% 80.0%
3611129 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 24.0 3.15e-01 100.0% 71.8%
4982229 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 30.0 3.96e-01 97.4% 99.0%
5038857 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 27.0 3.75e-01 90.8% 97.9%
5042588 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 28.0 3.82e-01 96.9% 100.0%
5053827 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 28.0 3.87e-01 96.4% 100.0%
4211051 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.52 29.0 3.78e-01 97.4% 100.0%
3989099 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.51 31.0 3.66e-01 94.9% 85.9%
3834233 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.51 30.0 2.39e-01 94.4% 30.0%
3265251 5095.1.1.0 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen 0.51 28.0 3.70e-01 92.3% 97.3%
3837828 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.50 31.0 3.66e-01 96.9% 88.1%
3275307 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 29.0 3.72e-01 96.4% 96.5%
5010181 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 29.0 3.43e-01 90.8% 82.3%
3929371 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 26.0 3.48e-01 96.4% 91.7%
4990610 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 26.0 3.57e-01 96.4% 100.0%