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NC_026590.1__YP_009124793.1__VC46_gp050__00050

Bact-Vir

NC_026590.1__YP_009124793.1__VC46_gp050__00050

Identity

Accession:
NC_026590 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-113
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.80 65.0 5.10e-01 88.1% 47.5%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.70 46.0 3.38e-01 79.7% 27.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.68 48.0 4.58e-01 76.3% 70.4%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 51.0 4.22e-01 83.1% 77.1%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.67 50.0 3.48e-01 83.1% 59.5%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.65 50.0 3.53e-01 84.7% 60.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.80e-01 74.6% 72.8%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 48.0 3.99e-01 83.1% 49.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 54.0 3.79e-01 96.6% 46.8%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.62 42.0 3.03e-01 79.7% 25.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 45.0 3.82e-01 79.7% 49.0%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 51.0 3.92e-01 100.0% 40.6%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 42.0 3.57e-01 72.9% 69.6%
2vqrA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.61 45.0 2.67e-01 79.7% 60.9%
3cxbA02 3.30.390.70 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein 0.61 38.0 3.19e-01 79.7% 34.9%
1w4tA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.60 43.0 3.09e-01 76.3% 62.9%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.17e-01 94.9% 85.3%
3dtyB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 45.0 3.18e-01 78.0% 68.6%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.60 47.0 2.73e-01 83.1% 72.4%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 40.0 3.59e-01 71.2% 59.3%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 45.0 2.92e-01 86.4% 50.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.31e-01 72.9% 96.0%
1vu2300 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.44e-01 79.7% 69.3%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.62e-01 76.3% 47.9%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.58 42.0 2.96e-01 76.3% 36.1%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.57 40.0 3.92e-01 86.4% 66.7%
4b8eB00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.57 43.0 3.04e-01 81.4% 53.6%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 2.76e-01 74.6% 51.4%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 38.0 3.47e-01 72.9% 47.7%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.43e-01 91.5% 81.7%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 36.0 3.40e-01 74.6% 52.1%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.07e-01 89.8% 62.6%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.38e-01 84.7% 85.3%
1tuoA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 36.0 3.50e-01 76.3% 60.0%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.56 43.0 3.05e-01 84.7% 29.8%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.55 41.0 2.88e-01 78.0% 37.6%
3a5pA00 2.60.200.70 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 41.0 3.47e-01 81.4% 54.4%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.55 45.0 4.18e-01 89.8% 88.0%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 42.0 3.45e-01 86.4% 89.9%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 43.0 3.72e-01 89.8% 60.6%
3mixA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.55 39.0 3.17e-01 78.0% 89.2%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.54 42.0 4.16e-01 84.7% 87.1%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 41.0 2.96e-01 84.7% 88.0%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.45e-01 88.1% 62.0%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 38.0 3.20e-01 78.0% 55.7%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 40.0 2.88e-01 89.8% 78.9%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.52 45.0 3.12e-01 96.6% 62.6%
4upiA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.51 40.0 2.39e-01 88.1% 15.8%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 36.0 2.64e-01 79.7% 78.8%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 39.0 3.51e-01 89.8% 67.0%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 39.0 3.36e-01 83.1% 92.5%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 36.0 3.21e-01 78.0% 68.5%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601171 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.77 56.0 4.97e-01 78.0% 55.3%
3177024 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.75 61.0 4.98e-01 93.2% 48.2%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.74 59.0 4.94e-01 88.1% 51.0%
3175310 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 55.0 3.77e-01 79.7% 26.2%
3773509 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 51.0 5.12e-01 76.3% 88.3%
None 0.71 62.0 3.75e-01 98.3% 19.5%
3497972 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.70 49.0 4.41e-01 74.6% 56.5%
3272708 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.68 52.0 4.75e-01 83.1% 62.5%
3508939 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.68 50.0 3.83e-01 78.0% 39.2%
3233789 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.67 58.0 3.54e-01 100.0% 47.2%
3892646 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.66 51.0 3.55e-01 84.7% 58.0%
3486006 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 47.0 3.63e-01 78.0% 37.9%
3476810 5.1.4.175 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT122_2nd 0.66 50.0 3.26e-01 81.4% 38.8%
1780243 3894.1.1.3 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.65 51.0 3.38e-01 86.4% 24.6%
3593933 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 47.0 3.56e-01 78.0% 60.7%
3276072 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.65 45.0 3.79e-01 74.6% 43.8%
5081361 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 3.80e-01 74.6% 51.0%
4932434 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 48.0 4.56e-01 81.4% 78.6%
11227 2484.1.1.47 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.63 44.0 3.78e-01 74.6% 45.7%
4322675 220.1.1.121 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.63 46.0 3.83e-01 79.7% 46.4%
4683204 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.63 50.0 4.07e-01 84.7% 58.1%
4302938 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 44.0 3.90e-01 78.0% 50.6%
3593624 633.23.1.23 alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.62 46.0 3.26e-01 81.4% 62.9%
4944386 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.76e-01 79.7% 75.5%
3244243 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 51.0 3.59e-01 96.6% 28.2%
4009839 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 42.0 3.60e-01 74.6% 44.2%
3279244 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.83e-01 79.7% 72.0%
5023763 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.61 42.0 3.15e-01 72.9% 60.6%
3237575 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 47.0 3.08e-01 88.1% 84.3%
3254948 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 44.0 2.99e-01 78.0% 71.2%
4119657 3740.1.1.1 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.60 44.0 2.80e-01 78.0% 26.7%
5028450 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.59 40.0 3.83e-01 78.0% 60.0%
3912125 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.59 44.0 3.73e-01 81.4% 71.0%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.59 42.0 3.47e-01 76.3% 40.9%
4971724 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.59 45.0 2.76e-01 81.4% 33.3%
4260682 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 46.0 3.30e-01 88.1% 76.2%
3912697 292.2.1.3 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.59 44.0 3.65e-01 83.1% 48.2%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 49.0 3.31e-01 100.0% 22.7%
5079107 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 44.0 3.39e-01 81.4% 53.1%
4408461 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.58 44.0 3.15e-01 83.1% 30.1%
3604573 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 47.0 2.77e-01 100.0% 13.6%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.57 44.0 3.31e-01 84.7% 76.0%
3780141 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 47.0 2.97e-01 96.6% 68.8%
3220737 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.57 44.0 2.79e-01 83.1% 20.1%
4949942 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.90e-01 86.4% 62.5%
3427234 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 45.0 3.03e-01 89.8% 84.9%
3945385 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.56 40.0 2.95e-01 78.0% 69.4%
1146605 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.56 45.0 3.26e-01 89.8% 68.5%
4127270 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.56 45.0 3.30e-01 91.5% 67.2%
3731940 633.23.1.12 alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.56 49.0 3.18e-01 96.6% 77.6%
2169163 7515.1.1.5 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.56 42.0 2.55e-01 83.1% 80.5%
4298074 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 44.0 3.21e-01 89.8% 69.1%
2527938 7515.1.1.5 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.55 42.0 2.51e-01 83.1% 80.4%
3275470 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 44.0 2.96e-01 89.8% 58.3%
3285383 220.1.1.232 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_11 0.55 42.0 3.44e-01 88.1% 60.8%
3297410 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 41.0 3.96e-01 91.5% 69.6%
5075725 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 3.01e-01 79.7% 34.5%
4092565 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.54 43.0 3.14e-01 89.8% 70.6%
3253551 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.53 47.0 3.06e-01 100.0% 82.1%
4000169 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.53 40.0 2.67e-01 83.1% 44.2%
4950628 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 46.0 2.96e-01 98.3% 88.6%
3228787 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.53 40.0 2.58e-01 83.1% 36.8%
4960065 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 38.0 2.52e-01 79.7% 98.8%
4956223 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 38.0 2.45e-01 79.7% 55.6%
3625623 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 41.0 3.11e-01 89.8% 82.0%
3416069 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 37.0 3.55e-01 79.7% 97.1%