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NC_026590.1__YP_009124823.1__VC46_gp152__00080
Bact-VirNC_026590.1__YP_009124823.1__VC46_gp152__00080
Identity
- Accession:
- NC_026590 ↗
- Kingdom:
- phage
Quality
69.3
mean pLDDT
Taxonomy
TaxID: 1486472
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-46
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.65 | 46.0 | 2.95e-01 | 78.6% | 74.4% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 46.0 | 3.05e-01 | 85.7% | 50.5% |
| 1knxE02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 50.0 | 3.39e-01 | 100.0% | 23.4% |
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 52.0 | 3.67e-01 | 100.0% | 29.0% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 44.0 | 3.17e-01 | 76.2% | 77.8% |
| 3maeA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.60 | 44.0 | 2.81e-01 | 81.0% | 68.8% |
| 2e45A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.60 | 35.0 | 3.69e-01 | 92.9% | 91.3% |
| 2qu8A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 43.0 | 2.83e-01 | 90.5% | 17.5% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 38.0 | 3.06e-01 | 85.7% | 31.4% |
| 2v4jB03 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.60e-01 | 85.7% | 49.2% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.58 | 45.0 | 2.80e-01 | 85.7% | 29.7% |
| 4cj0A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 48.0 | 2.76e-01 | 95.2% | 51.0% |
| 1mtpA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.57 | 43.0 | 3.48e-01 | 85.7% | 61.5% |
| 4rckA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.57 | 45.0 | 2.89e-01 | 88.1% | 37.3% |
| 7yj5A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.57 | 42.0 | 2.89e-01 | 88.1% | 21.9% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.56 | 36.0 | 3.34e-01 | 97.6% | 47.3% |
| 3oxnA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 49.0 | 3.58e-01 | 100.0% | 40.9% |
| 3tefA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 41.0 | 2.73e-01 | 100.0% | 18.9% |
| 7w42B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 47.0 | 3.20e-01 | 100.0% | 57.5% |
| 4i14A02 | 3.40.50.10990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II | 0.56 | 42.0 | 3.25e-01 | 97.6% | 79.4% |
| 3dmgA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 44.0 | 2.97e-01 | 100.0% | 46.9% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 43.0 | 3.35e-01 | 88.1% | 42.1% |
| 5cygB00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.55 | 43.0 | 2.74e-01 | 100.0% | 51.1% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 46.0 | 3.52e-01 | 100.0% | 40.8% |
| 6lw5A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 43.0 | 2.69e-01 | 92.9% | 46.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 39.0 | 3.41e-01 | 81.0% | 57.1% |
| 3v7iA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 41.0 | 2.95e-01 | 90.5% | 27.2% |
| 1tedA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 40.0 | 2.84e-01 | 85.7% | 39.6% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.53 | 36.0 | 3.09e-01 | 71.4% | 58.8% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 44.0 | 3.81e-01 | 95.2% | 70.6% |
| 6zzmA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.53 | 45.0 | 2.89e-01 | 100.0% | 22.8% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.53 | 41.0 | 3.38e-01 | 85.7% | 54.7% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 44.0 | 3.00e-01 | 100.0% | 25.3% |
| 2wr7C01 | 3.90.20.10 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › | 0.52 | 43.0 | 2.70e-01 | 92.9% | 64.2% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 45.0 | 3.46e-01 | 97.6% | 45.4% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 39.0 | 2.79e-01 | 85.7% | 24.8% |
| 2h84A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 40.0 | 2.84e-01 | 90.5% | 26.4% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.52 | 36.0 | 3.85e-01 | 100.0% | 88.9% |
| 4inoA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 44.0 | 3.17e-01 | 100.0% | 89.7% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 38.0 | 2.90e-01 | 90.5% | 35.1% |
| 2fqmA01 | 6.10.140.830 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 40.0 | 4.00e-01 | 95.2% | 84.8% |
| 3euoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 36.0 | 2.71e-01 | 92.9% | 30.6% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 41.0 | 2.72e-01 | 95.2% | 36.5% |
| 6g0nA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 45.0 | 2.60e-01 | 100.0% | 13.8% |
| 5i47B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 41.0 | 3.23e-01 | 100.0% | 42.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978506 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.68 | 56.0 | 3.73e-01 | 100.0% | 23.7% |
| 3830411 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.67 | 49.0 | 2.76e-01 | 100.0% | 6.9% |
| 5057744 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.65 | 44.0 | 2.94e-01 | 100.0% | 17.6% |
| 4954522 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.64 | 46.0 | 3.64e-01 | 78.6% | 71.3% |
| 5058520 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.64 | 54.0 | 3.94e-01 | 92.9% | 40.9% |
| 4026684 | 192.20.1.7 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 | 0.64 | 44.0 | 3.33e-01 | 100.0% | 29.5% |
| 4279415 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.63 | 51.0 | 3.00e-01 | 100.0% | 22.0% |
| 3377432 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.62 | 48.0 | 2.72e-01 | 100.0% | 7.3% |
| 3989090 | 312.1.1.1 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_transf | 0.62 | 47.0 | 3.24e-01 | 100.0% | 21.6% |
| 4976626 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.60 | 50.0 | 3.21e-01 | 100.0% | 19.6% |
| 4776306 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.60 | 48.0 | 3.29e-01 | 100.0% | 23.5% |
| 4279367 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 43.0 | 3.73e-01 | 100.0% | 46.3% |
| 4024082 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.59 | 45.0 | 2.74e-01 | 85.7% | 23.6% |
| 3945055 | 2484.2.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N | 0.58 | 42.0 | 3.41e-01 | 81.0% | 95.3% |
| 4060927 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.58 | 45.0 | 3.12e-01 | 95.2% | 76.0% |
| 3880625 | 389.1.1.103 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF30000 | 0.57 | 37.0 | 3.63e-01 | 97.6% | 60.0% |
| 3844858 | 220.1.1.39 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZFYVE21_C | 0.57 | 45.0 | 3.14e-01 | 90.5% | 93.5% |
| 4224431 | 101.1.1.32 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD | 0.57 | 49.0 | 3.51e-01 | 100.0% | 51.5% |
| 3580124 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 47.0 | 4.56e-01 | 100.0% | 100.0% |
| 3566423 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 43.0 | 2.82e-01 | 88.1% | 21.4% |
| 4995927 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.56 | 39.0 | 3.21e-01 | 78.6% | 60.0% |
| 4559532 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.55 | 40.0 | 3.51e-01 | 76.2% | 73.3% |
| 4952130 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.55 | 43.0 | 2.82e-01 | 100.0% | 17.8% |
| 3604387 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.55 | 46.0 | 2.78e-01 | 97.6% | 22.4% |
| 4027519 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.54 | 35.0 | 3.80e-01 | 100.0% | 77.1% |
| 5079949 | 829.1.1.3 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 | 0.54 | 46.0 | 3.57e-01 | 97.6% | 62.1% |
| 4070661 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 45.0 | 3.98e-01 | 97.6% | 67.7% |
| 4928400 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.54 | 44.0 | 3.68e-01 | 95.2% | 70.9% |
| 4961335 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 41.0 | 3.34e-01 | 100.0% | 46.7% |
| 3408848 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 45.0 | 3.76e-01 | 97.6% | 58.7% |
| 5065366 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 47.0 | 3.38e-01 | 100.0% | 42.5% |
| 5033346 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 42.0 | 3.14e-01 | 95.2% | 36.8% |
| 3723461 | 4099.1.1.9 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 | 0.52 | 44.0 | 3.10e-01 | 100.0% | 37.2% |
| 2640297 | 808.1.1.1 ↗ | a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap | 0.52 | 40.0 | 3.11e-01 | 97.6% | 81.9% |
| 3507677 | 101.35.1.25 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26215 | 0.52 | 45.0 | 3.50e-01 | 100.0% | 52.7% |
| 5036602 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.52 | 44.0 | 3.57e-01 | 100.0% | 49.4% |
| 4874840 | 704.1.1.1 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap | 0.51 | 37.0 | 3.00e-01 | 76.2% | 93.0% |
| 3254908 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 38.0 | 2.33e-01 | 85.7% | 12.6% |
| 4117250 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.50 | 41.0 | 3.86e-01 | 100.0% | 78.2% |
| 3553091 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 43.0 | 2.81e-01 | 100.0% | 48.0% |
| 5037410 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.50 | 44.0 | 2.71e-01 | 100.0% | 16.5% |