←Back to structures

NC_026590.1__YP_009124846.1__VC46_gp129__00103

Bact-Vir

NC_026590.1__YP_009124846.1__VC46_gp129__00103

Identity

Accession:
NC_026590 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gaiavirus› Mycobacterium_phage_Gaia

TaxID: 1486472

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-111
PDB
Domain cluster: rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00048__D76-188
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06339.19 best Ectoine_synth 95.1 5.60e-27 98.1% 73.2%
D2 medium residues 132-284
PDB
Domain cluster: rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00232__D12-141
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02195.27 best ParB_N 27.1 5.20e-06 49.0% 62.1%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xw3A01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.77 48.0 5.98e-01 79.7% 99.0%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 28.0 4.69e-01 82.4% 98.1%
2hwjA01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.64 45.0 4.96e-01 74.5% 88.1%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 22.0 3.04e-01 88.9% 70.7%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 28.0 2.94e-01 76.5% 55.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940273 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.86 43.0 6.22e-01 71.2% 100.0%
2543651 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.85 49.0 6.46e-01 75.8% 100.0%
2061501 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.82 47.0 5.82e-01 86.9% 87.9%
3278076 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.79 47.0 6.01e-01 86.9% 100.0%
3772471 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.76 45.0 5.81e-01 79.7% 100.0%
139963 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 28.0 4.69e-01 82.4% 98.1%
5018770 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.69 51.0 5.63e-01 77.1% 100.0%
3602844 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.67 46.0 5.13e-01 74.5% 88.3%
3178377 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.64 48.0 5.34e-01 79.7% 96.0%
4965811 101.1.1.559 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.62 25.0 4.00e-01 89.5% 96.7%
4984325 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.61 45.0 4.45e-01 83.0% 71.9%
3927372 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 27.0 3.68e-01 89.5% 91.3%