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NC_026590.1__YP_009124855.1__VC46_gp120__00112

Bact-Vir

Identity

Accession:: NC_026590 ↗
Kingdom:: phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gaiavirus› Mycobacterium_phage_Gaia

TaxID: 1486472

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-65

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.81	57.0	5.54e-01	73.8%	81.9%
5af7B03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.73	59.0	4.47e-01	86.2%	46.6%
2ewfA02	1.20.1270.310	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.72	48.0	4.48e-01	73.8%	55.6%
4fzsA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.70	56.0	3.93e-01	87.7%	76.1%
3mekA04	1.25.40.970	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.69	44.0	4.14e-01	87.7%	52.5%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.69	50.0	4.49e-01	76.9%	90.0%
4e6nA02	6.10.140.1010	Special › Helix non-globular › Helix Hairpins ›	0.67	47.0	4.71e-01	73.8%	75.8%
7m2wE01	1.20.120.1900	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain	0.65	55.0	3.62e-01	98.5%	66.5%
4yt2A02	1.20.120.1300	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain	0.61	45.0	3.79e-01	78.5%	87.7%
4kwaB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	50.0	3.51e-01	98.5%	66.7%
4tpoA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.55	46.0	2.90e-01	98.5%	59.3%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4030407	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.77	54.0	5.12e-01	72.3%	68.0%
3992628	6026.1.1.22 ↗	alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › PF29335	0.73	61.0	5.73e-01	92.3%	81.2%
3243897	3684.1.1.0 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like	0.73	60.0	4.63e-01	89.2%	85.7%
5041069	223.1.1.122 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA	0.71	48.0	3.30e-01	70.8%	31.3%
3290328	159.1.1.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG	0.68	46.0	3.91e-01	70.8%	43.8%
4975688	547.1.1.4 ↗	alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Shikimate_DH	0.68	48.0	3.18e-01	73.8%	19.6%
None	—		0.65	58.0	3.72e-01	98.5%	42.7%
3596860	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.64	53.0	3.67e-01	92.3%	65.8%
4091575	109.4.1.2088 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dopey_N, TPR_DOP1_M, PF26706	0.64	47.0	2.60e-01	81.5%	17.4%
5055919	159.1.1.4 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH	0.53	42.0	3.78e-01	86.2%	63.3%