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NC_026590.1__YP_009124856.1__VC46_gp119__00113
Bact-VirNC_026590.1__YP_009124856.1__VC46_gp119__00113
Identity
- Accession:
- NC_026590 ↗
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Taxonomy
TaxID: 1486472
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-39_56-100
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jqkA03 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 49.0 | 3.79e-01 | 76.2% | 85.7% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 48.0 | 4.70e-01 | 77.4% | 85.9% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.61 | 42.0 | 3.48e-01 | 72.6% | 100.0% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 35.0 | 3.39e-01 | 97.6% | 49.5% |
| 2qe7G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.60 | 36.0 | 3.42e-01 | 98.8% | 51.5% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.59 | 37.0 | 3.60e-01 | 98.8% | 57.1% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 31.0 | 3.72e-01 | 98.8% | 76.8% |
| 4btfA01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.58 | 52.0 | 4.93e-01 | 100.0% | 95.0% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.57 | 50.0 | 4.42e-01 | 97.6% | 84.6% |
| 3kmiA00 | 1.20.120.940 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Putative aromatic acid exporter, C-terminal domain | 0.57 | 51.0 | 4.02e-01 | 100.0% | 97.7% |
| 3ripA02 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.56 | 50.0 | 3.51e-01 | 100.0% | 48.7% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.56 | 47.0 | 4.24e-01 | 90.5% | 88.6% |
| 5zorA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 27.0 | 2.95e-01 | 100.0% | 53.4% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.56 | 37.0 | 4.13e-01 | 89.3% | 87.7% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.55 | 42.0 | 4.28e-01 | 79.8% | 91.3% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.54 | 41.0 | 3.65e-01 | 79.8% | 82.9% |
| 3i4uA01 | 1.20.120.1080 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 29.0 | 2.72e-01 | 76.2% | 46.4% |
| 1o3uA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 40.0 | 3.58e-01 | 79.8% | 82.5% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.53 | 36.0 | 3.73e-01 | 98.8% | 75.3% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.53 | 40.0 | 4.06e-01 | 79.8% | 97.6% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.53 | 38.0 | 3.21e-01 | 77.4% | 58.5% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 36.0 | 3.71e-01 | 96.4% | 75.3% |
| 1w9cA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 37.0 | 2.56e-01 | 76.2% | 44.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3636670 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.64 | 58.0 | 4.48e-01 | 100.0% | 85.6% |
| 4455505 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.64 | 47.0 | 4.14e-01 | 76.2% | 72.2% |
| 3731232 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.63 | 57.0 | 4.59e-01 | 100.0% | 93.1% |
| 5041273 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.62 | 45.0 | 4.22e-01 | 77.4% | 86.7% |
| 4170026 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.61 | 55.0 | 4.61e-01 | 100.0% | 70.7% |
| 3565064 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 53.0 | 3.27e-01 | 100.0% | 20.7% |
| 3930417 | 7004.1.1.0 ↗ | 0.60 | 51.0 | 5.09e-01 | 100.0% | 92.9% | |
| 3989722 | 632.24.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain | 0.60 | 44.0 | 4.93e-01 | 79.8% | 96.9% |
| 3227678 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.59 | 44.0 | 4.12e-01 | 77.4% | 84.0% |
| 3391090 | 7004.1.1.0 ↗ | 0.59 | 52.0 | 5.05e-01 | 100.0% | 90.5% | |
| 3412019 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 43.0 | 4.19e-01 | 76.2% | 100.0% |
| 3766796 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.58 | 51.0 | 4.38e-01 | 100.0% | 92.9% |
| 3449605 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 42.0 | 3.88e-01 | 77.4% | 91.8% |
| 4943804 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.58 | 41.0 | 3.89e-01 | 73.8% | 84.8% |
| 3743351 | 611.9.1.6 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Ran-binding | 0.58 | 51.0 | 4.19e-01 | 100.0% | 84.5% |
| 3315251 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.55 | 39.0 | 3.09e-01 | 73.8% | 98.9% |
| 4027540 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.55 | 40.0 | 3.27e-01 | 77.4% | 66.9% |
| 3634546 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.55 | 40.0 | 4.23e-01 | 77.4% | 94.7% |
| 3464325 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.55 | 36.0 | 3.59e-01 | 97.6% | 65.9% |
| 3365588 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.54 | 43.0 | 3.46e-01 | 86.9% | 69.7% |
| 4024704 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.53 | 39.0 | 3.39e-01 | 78.6% | 79.2% |
| 5059610 | 148.1.3.403 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA_pol_Rpb1_5 | 0.52 | 41.0 | 3.38e-01 | 95.2% | 46.5% |
| 4028391 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.50 | 41.0 | 3.50e-01 | 86.9% | 74.8% |
| 4024271 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.50 | 41.0 | 3.52e-01 | 88.1% | 75.6% |
| 4024467 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.50 | 41.0 | 3.39e-01 | 86.9% | 69.0% |