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NC_026590.1__YP_009124870.1__VC46_gp105__00127

Bact-Vir

NC_026590.1__YP_009124870.1__VC46_gp105__00127

Identity

Accession:
NC_026590 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gaiavirus› Mycobacterium_phage_Gaia

TaxID: 1486472

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-55
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 60.0 6.12e-01 94.2% 88.2%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 56.0 5.70e-01 92.3% 84.0%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 4.83e-01 100.0% 56.3%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 56.0 5.12e-01 94.2% 81.7%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.18e-01 75.0% 52.7%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 55.0 3.52e-01 98.1% 60.3%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.62 51.0 4.44e-01 98.1% 81.8%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.49e-01 100.0% 94.1%
1t0fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.29e-01 100.0% 53.5%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 44.0 3.08e-01 86.5% 40.6%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 47.0 3.88e-01 92.3% 65.3%
4jmjA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 51.0 3.53e-01 100.0% 46.4%
1oqcA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.57 42.0 3.44e-01 84.6% 60.7%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 39.0 3.60e-01 71.2% 63.9%
4k22A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.57 49.0 3.93e-01 100.0% 71.3%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.57 39.0 3.94e-01 73.1% 90.4%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.56 48.0 3.55e-01 98.1% 60.0%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 45.0 4.28e-01 100.0% 82.9%
5w87A01 3.30.2410.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain 0.56 43.0 3.67e-01 88.5% 57.4%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 49.0 4.41e-01 100.0% 93.1%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.55 39.0 3.82e-01 75.0% 87.9%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 44.0 4.38e-01 100.0% 96.6%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.54 41.0 3.68e-01 84.6% 58.1%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 39.0 3.68e-01 86.5% 87.3%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.58e-01 86.5% 92.9%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.79e-01 82.7% 84.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 4.09e-01 100.0% 85.5%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 39.0 3.60e-01 90.4% 75.3%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 3.83e-01 100.0% 78.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3313889 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 5.98e-01 92.3% 90.0%
3928087 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.75 59.0 5.39e-01 94.2% 64.3%
3937317 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.75 59.0 6.02e-01 94.2% 90.0%
3243611 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 5.90e-01 94.2% 90.0%
3522325 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.74 58.0 5.45e-01 94.2% 69.2%
3479343 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 57.0 5.95e-01 92.3% 100.0%
3730705 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 56.0 5.74e-01 94.2% 92.0%
3929086 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.71 56.0 5.52e-01 94.2% 81.8%
3632120 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.71 59.0 5.25e-01 98.1% 80.0%
5077082 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 4.80e-01 100.0% 52.7%
3793542 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 5.19e-01 94.2% 78.3%
3234027 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.67 53.0 5.11e-01 94.2% 76.7%
3184342 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.42e-01 100.0% 83.3%
4142344 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.53e-01 100.0% 90.9%
4678981 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 5.39e-01 100.0% 96.0%
3574709 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 5.25e-01 94.2% 86.7%
3987909 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.65 56.0 4.20e-01 100.0% 63.0%
4928641 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.64 50.0 4.47e-01 88.5% 60.0%
3929147 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.64 50.0 4.99e-01 100.0% 85.5%
3598243 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.64 51.0 4.86e-01 98.1% 92.3%
3781058 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 53.0 5.27e-01 100.0% 92.7%
3583564 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.59 45.0 4.15e-01 86.5% 65.7%
3189295 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.58 45.0 3.75e-01 86.5% 80.0%
4073017 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.57 46.0 4.53e-01 90.4% 89.1%
3925190 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.56 46.0 3.11e-01 100.0% 22.6%
3241469 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.55 39.0 3.92e-01 80.8% 78.2%
3501795 548.1.1.2 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRAB 0.54 39.0 4.03e-01 80.8% 90.0%
4395758 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.54 47.0 4.14e-01 100.0% 81.2%
3974013 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.53 44.0 4.24e-01 92.3% 100.0%
3288310 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.52 44.0 4.01e-01 96.2% 94.3%